Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02256 ATGGACGAAGAGGTGCGCAAGATCTTCAACAAGTTCGACAAGAACGGGGACGGGAAGATCTCGTGCGCGGAGTTGAGGGACCTGATGGCGGCCCTGGGATCGAAAACGACGGCGGAGGAGGTGCGGCGCATGATGGCGGAGCTCGACCGAAACGGCGACGGCTACATTGATTTGAAGGAGTTCGGGGAGTTTCACTGTAGTGGCGACGGGGGTGACGGGAGGGAGCTACGGGAGGCGTTCGAGCTGTACGATCTGGACAAAAACGGGCTGATCTCGGCAAAGGAACTGCACTCCGTGATGCGGAGGCTGGGAGAGAAGTGCTCCCTCAGTGACTGCCGGAGAATGATTGGAAACGTAGATGCTGACGGCGACGGCAACGTTAATTTCGAAGAGTTCAAAAAGATGATGACGCGCTCGTAG 420 0.5738 MDEEVRKIFNKFDKNGDGKISCAELRDLMAALGSKTTAEEVRRMMAELDRNGDGYIDLKEFGEFHCSGDGGDGRELREAFELYDLDKNGLISAKELHSVMRRLGEKCSLSDCRRMIGNVDADGDGNVNFEEFKKMMTRS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02256 139 ProSitePatterns EF-hand calcium-binding domain. 120 132 IPR018247 -
Spst1g02256 139 ProSiteProfiles EF-hand calcium-binding domain profile. 36 70 IPR002048 GO:0005509
Spst1g02256 139 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 75 137 - -
Spst1g02256 139 CDD EFh 4 61 IPR002048 GO:0005509
Spst1g02256 139 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Spst1g02256 139 Gene3D - 72 139 - -
Spst1g02256 139 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Spst1g02256 139 SUPERFAMILY EF-hand 3 138 IPR011992 -
Spst1g02256 139 CDD EFh 75 137 IPR002048 GO:0005509
Spst1g02256 139 Pfam EF-hand domain pair 75 137 IPR002048 GO:0005509
Spst1g02256 139 Pfam EF-hand domain pair 3 62 IPR002048 GO:0005509
Spst1g02256 139 ProSiteProfiles EF-hand calcium-binding domain profile. 107 139 IPR002048 GO:0005509
Spst1g02256 139 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Spst1g02256 139 Gene3D - 1 69 - -
Spst1g02256 139 SMART efh_1 111 139 IPR002048 GO:0005509
Spst1g02256 139 SMART efh_1 4 32 IPR002048 GO:0005509
Spst1g02256 139 SMART efh_1 40 68 IPR002048 GO:0005509
Spst1g02256 139 SMART efh_1 75 103 IPR002048 GO:0005509
Spst1g02256 139 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Spst1g02256 139 FunFam Probable calcium-binding protein CML27 69 139 - -
Spst1g02256 139 FunFam Calmodulin A 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02256 Spst-Chr1 31169548 31169967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02256 3 136 EF-hand Containing Proteins AT1G66400 57.246 1.61e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02256 K13448 - gmx:100806813 264.233