Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02242 ATGGAAGAAAGCCCTCGAGCTCGCAGAAAGCGAAGCCTCCCTTTTTCTTCTTCTCCTCCTTCTTCTCCACTTCCCAAGCGCCCCAATTTTCCTTCCTTCCAAGACATCCCCAACCTCCCTTCCAACATTAAATCCCTCTGCCACCTCATCGCTACCACCTCCGCCGCCGCCGTGGAGCAGGCCCTCCAATGCGCAGCCGTCGACGTCACCCCTCAGGATGTTGAGGAAGTCCTCAGACTCTCCTATGGCTTCCCCGGCCAGGCCGTCAAATTCTTCCGGTGGAGCGGCCGGCACCTCCGCGACAACCACACGCCCTATTCTTGGAACCTCGTGGTCGACCTCTTGGGCAAGAATCGGTTCTTTGACGCAATGTGGGACGCTATTAAATCAATGCAGAAAGAAGGGTTACTCTCACTGGCCACTTTCGCCGCTGTCTTTGGGAGCTACGTCGTCGCCAACAGAACCCGGGAAGCGATTGTGGCGTTTGAGGTTATGGAGAATTACGGTTGTGTGAGGGACGTTGTTGCTCTGAATTCACTGTTGAGTGCGATTTGTAGAGATGGTAGGACTGTTGATGCTTGTGATTACTTGCAGGTTGCTAAGAAATTTGTCCGGCCGGATGCCGATTCTTACGCCATTTTGATGGAAGGATGGGAGGGAGAAGGAGACAAGGGTGTGGTTGGTGCTAAGGAGACTTTTGCTGAGATGGTGATTGAGATTGGATGGGATCCAGCCAATATACCTGCTTATGATTCATTCCTGTGTACTCTTGTTAGAGGGCCTGATGGATTGCTTGAGGCTATTAAGTTTGTTGATTCAATGAGGGATAGAAGGTGTTACCCTGGTCTGAGGTTCTTGAAGGTTGCATTGGATGAGTGTGTCAAGTGTAATGATGCTAGGACTGCTAAGTTTTTCTGGGAGGTGTTGGTGGAGGTGGGGAGGGTCTTGCAGCCCTCCACAGAGATGTACAATGTGATGATTGCTTTGTATTGTTACTGTGGTGATACTGATGCTGCGAGGACCATGCTTGATGAGATGGTTTACCGAGGGGCGTTTCCGGATGTTGTGACTTATAACTTGCTGTTTAAGTTCATGATCAAAGGGAGGAAGTTGAGGGAGGCGTCGGCAGTGTTTGCTGAGATGGTGAAGAACGAGTTTGTCCCGGATCAGGATAATTGTGATGCGGCGGTTAAGGCGTATGTGGATTGTGGGGAGTCTCTTATGGCCATTAAGGTTTGGAAGTGTTTGGTTGAGAATTACCGGAATGATTTGGAGCGGACAGCAAATTTTCTGGTTGTGGGGCTTCGTGATTTGAATAGGGTTCCAGAGGCGGTTAAGTATGCTGAGGATATGATTGGCAGAGGAATCAGGTTGTCCTCTTCCACGTTGTCAAAACTGAGACAAACCCTTGTCAAGGAAAGAAAAGAATTTGTGTATGAAGAACTTTTGAGGAAGTGCAAATCTCATTAA 1470 0.4932 MEESPRARRKRSLPFSSSPPSSPLPKRPNFPSFQDIPNLPSNIKSLCHLIATTSAAAVEQALQCAAVDVTPQDVEEVLRLSYGFPGQAVKFFRWSGRHLRDNHTPYSWNLVVDLLGKNRFFDAMWDAIKSMQKEGLLSLATFAAVFGSYVVANRTREAIVAFEVMENYGCVRDVVALNSLLSAICRDGRTVDACDYLQVAKKFVRPDADSYAILMEGWEGEGDKGVVGAKETFAEMVIEIGWDPANIPAYDSFLCTLVRGPDGLLEAIKFVDSMRDRRCYPGLRFLKVALDECVKCNDARTAKFFWEVLVEVGRVLQPSTEMYNVMIALYCYCGDTDAARTMLDEMVYRGAFPDVVTYNLLFKFMIKGRKLREASAVFAEMVKNEFVPDQDNCDAAVKAYVDCGESLMAIKVWKCLVENYRNDLERTANFLVVGLRDLNRVPEAVKYAEDMIGRGIRLSSSTLSKLRQTLVKERKEFVYEELLRKCKSH 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02242 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Spst1g02242 489 Pfam PPR repeat family 318 363 IPR002885 -
Spst1g02242 489 MobiDBLite consensus disorder prediction 1 31 - -
Spst1g02242 489 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 229 472 - -
Spst1g02242 489 Gene3D Tetratricopeptide repeat domain 264 432 IPR011990 GO:0005515
Spst1g02242 489 Gene3D Tetratricopeptide repeat domain 81 237 IPR011990 GO:0005515
Spst1g02242 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Spst1g02242 489 NCBIfam pentatricopeptide repeat 356 389 IPR002885 -
Spst1g02242 489 NCBIfam pentatricopeptide repeat 322 354 IPR002885 -
Spst1g02242 489 NCBIfam pentatricopeptide repeat 106 136 IPR002885 -
Spst1g02242 489 Pfam PPR repeat 106 136 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02242 Spst-Chr1 30891722 30893191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02242 154 485 Glycosyltransferase AT1G05670 25.074 3.23e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02242 - - vun:114191149 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02242 1 30891722 30893191 Spst1g02242 1 30891722 30893191 ECH