Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02239 ATGGGAGATCCAGCGGAGAGGTTGGAATCGGAGGGTTTGGATTCCGGCGCCGTCGTCAAGACCGATGACTTGTGCATGGAAATCGATCCGCCATTTCAGGAAAACGTCGCCACCGCCGAGGACTGGAGGAAAGCGCTCAACAGAGTCGTCCCCGCCGTCGTCGTCCTCCGCACCACCGCCACTCGCTCCTTCGACACTGAGTCCGCCGCCGCTAGCTACGCTACCGGCTTCATCGTCGACAAGTGCCGCGGCATCATTCTCACCAATCGCCACGTCGTCAAACCAGGTCCTGTGGTTGCTGAAGCCATGTTTCTGAATCGCGAAGAGGTTCCAGTGCATCCGATTTACAGAGATCCGGTACATGATTTTGGGTTCTTTCGTTATGATCCTGGTGCTATACAATTTCTGAACTATGAAGAGATACCTCTTGCTCCTGAAGGTGCCTGTGTTGGACTAGAAATTAGAGTTGTTGGTAATGATAGTGGCGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGATAGGGATGCTCCTCATTATAAGAAGTATGTTGTAGAATATCTGGATGGGTACAATGACTTCAACACATTCTATATGCAAGCAGCATCTGGGACCAAAGGAGGATCAAGTGGTTCCCCAGTTATAGATTGGCAAGGCAGGGCTGTGGCCCTGAATGCTGGGAGCAAGTCATCCAGTGCATCAGCATTCTTTCTACCTCTAGAACGAGTGGTGAGGGCCTTAAGGTTTCTTCAAAAGGGAAGTGAAACTTATGTTGATAAATGGAAGGCAGTTTCTATACCTCGTGGTACACTTCAGGTGACATTTCTCCATAAAGGGTTTGATGAGACTCGTCGCCTTGGGCTCAAAAGTGAGACAGAGCAGATAGTACGCCAGGCTTCTCCATCTGGTGAAACTGGAATGCTTGTTGTGGATTCTGTGGTGCCAGGTGGTCCAGGTTATAAACATTTGGAACCAGGTGATGTACTTGTTCGTGTCAATGGAGAAGTCATTACTCAATTCCTGAAGCTGGAGACTCTACTTGATGACAGTGTAAGCAAGAATATTGAATTACAAATTGAAAGGGGTGGCACATCAAAGAGTTTAACTTTGTTGGTGCAAGATTTGCACTCAATAACACCTGATTATTTTTTAGAAGTGAGTGGGGCAGTAATACACCCTCTTTCCTATCAGCAGGCTAGAAACTTCCGTTTCCATTGCAGTCTTGTTTATGTGGCTGAACCAGGATATATGCTCTTCAGAGCAGGTGTTCCTCGCCATGCAATAATCAAGAAATTTGCTGGTGAAGAAATATCTTGTCTTGAGGAACTAATAACATTTCTTTCTAAGCTATCTAGGGGTGCACGAGTACCTTTGGAATATATAAGCTACATGGATCGTCATCGAAGGAAGCATGTGTTGGTCACAGTTGATCGGCATGAATGGTATGCACCACCCCAGATATACACTCGTGATAACAGTACTGGCCTTTGGATTGCTAAGCCAGCTTTTCAGCTTGACTCCCCCTTTCTATCATCTGGTGCTAAAGATGTTGAAAATCTGTCAAGACAGCCAATTTCACTAACTGTTGAGCATGCTTGTGCGGGTCATGTGTGTGAAGATAACAATCAGGAGTTTGTTGACGGTGTCACTAACATGGAAACCAATTGTGAAGATCCCTCAGAGTGTGCATCTCATCACAATGCATCTGATGGCATGATAAAAAAACGAAGAGTGGAGGAAGATTTATCAGCTGATGGAAGTGTTGTTACTGATTTTTCCCTAAACGATACCAGGGAAACTAAGCTAGATAAATCAAGTGTCATAGAGGATGACATGTTAATGGATTTTCAAGGTGCAACTGCCGCTGCAGCAAATGCATCAGTTGCTGAACGTGTGATTGAGCCTACTCTTGTGATGTTTGAGCATGGTACTAATGCTGACTCTGGTTTTCGTATGGTTTTTAAATTATTCCGATGGGACGTGCAGGTTTTTGTTCCCCCATCTTGTATGCTTGATGGTGTTCATTCACAGCACTTTTTTGGAACTGGTGTCATAATATATCACTCCCAAGATATGGGATTAGTTGTAGTTGACAAGAATACAGTTGCAATATCTGCCTCTGATGTAATGCTATCCTTCGCTGCCTTCCCAGTTGAAATTCCAGGAGAGGTTGTGTTTCTCCATCCTGTTCACAATTATGCTCTCATATCATATGATCCTTCAGCATTGGGACCTGTTGGTGGTTCAGTTGTTCGTGCTGCAGAGTTACTTCCAGAGCCAGCATTACGGCGGGGAGATTCTGTTTACCTTGTGGGGTTGAGTAGAAGCCTTCAAGCAACTTCTAGGAAATCAGTTGTTACCAATCCTTATGCTGCATTAACTATAGGATCTGCTGATTCCCCTCGCTACAGAGCAACCAATATGGAAGTAATTGAGCTCGATACAGATTTTGGCAGTACATTTTCGGGTGTGCTAACAGATGAACTAGGAAGGGTCCAAGCTATATGGGGAAGCTTCTCAACTCAGCTGAAATTTGGTTGCAGTACCTCGGAAGATCATCAATTTGTGAGAGGTATTCCAATTTATGCAATAAGTCAGGTTCTTGACAAGATTGTATCTGGTGCAAATGGGCCTCCTCTTCTCATAAATGGTGTCAAAAGGCCTATGCCACTTTTAAGAATTTTAGAGGTTGAACTTTATCCAACATTGCTATCGAAGGCTCGTAGTTTTGGATTGAGTGATGATTGGATTCAGGCACTTGTTAAGAAAGATCCAGTGAGACGTCAGGTTTTACGTGTTAGAGGTTGTTTGGCTGGATCAAAGGCTGAAAATCTTTTAGAACAAGGCGATATGGTCTTAGCAATCAATAAAGAACCAGTCACATGTTTCCGAGACATTGAAAATGCTTGCCAAGCGTTAGACAAATTAAATTCGACAGATGGGAAGCTTCACATGACTATTTTCCGGCAGGGACGAGAGGTTGAACTTCTTGTGGGAACAAATGTTAGGGATGGAAATGGCACTGCCCGTGCAATTAATTGGTGTGGTTGTATTGTACAAGATCCACATCCAGCAGTTCGTGCTCTTGGTTTTCTTCCCGAAGAAGGTCATGGTGTATATGTGGCAAGGTGGTGTCATGGGAGTCCTGTACATAGATATGGTCTATATGCTCTTCAATGGATAGTGGAAATTAATGGAAAACCAACTCCAAATCTAGATGCTTTCGTTGATGTGACAAAGGAACTAGAACATGGGGAGTTTGTTCGGGTAAGGACAATTCACCTCAATGGGAAGCCACGAGTCCTAACATTAAAGCAAGATTTGCACTACTGGCCTACGTGGGAATTGAGATTTGATCCAAATTCTGCGATGTGGCATCGCAATATAATCAAGGGATTGAACTGCAGTACTTGA 3420 0.4427 MGDPAERLESEGLDSGAVVKTDDLCMEIDPPFQENVATAEDWRKALNRVVPAVVVLRTTATRSFDTESAAASYATGFIVDKCRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPGAIQFLNYEEIPLAPEGACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKYVVEYLDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQKGSETYVDKWKAVSIPRGTLQVTFLHKGFDETRRLGLKSETEQIVRQASPSGETGMLVVDSVVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETLLDDSVSKNIELQIERGGTSKSLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFHCSLVYVAEPGYMLFRAGVPRHAIIKKFAGEEISCLEELITFLSKLSRGARVPLEYISYMDRHRRKHVLVTVDRHEWYAPPQIYTRDNSTGLWIAKPAFQLDSPFLSSGAKDVENLSRQPISLTVEHACAGHVCEDNNQEFVDGVTNMETNCEDPSECASHHNASDGMIKKRRVEEDLSADGSVVTDFSLNDTRETKLDKSSVIEDDMLMDFQGATAAAANASVAERVIEPTLVMFEHGTNADSGFRMVFKLFRWDVQVFVPPSCMLDGVHSQHFFGTGVIIYHSQDMGLVVVDKNTVAISASDVMLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPVGGSVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSVVTNPYAALTIGSADSPRYRATNMEVIELDTDFGSTFSGVLTDELGRVQAIWGSFSTQLKFGCSTSEDHQFVRGIPIYAISQVLDKIVSGANGPPLLINGVKRPMPLLRILEVELYPTLLSKARSFGLSDDWIQALVKKDPVRRQVLRVRGCLAGSKAENLLEQGDMVLAINKEPVTCFRDIENACQALDKLNSTDGKLHMTIFRQGREVELLVGTNVRDGNGTARAINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPNLDAFVDVTKELEHGEFVRVRTIHLNGKPRVLTLKQDLHYWPTWELRFDPNSAMWHRNIIKGLNCST 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02239 1139 SUPERFAMILY PDZ domain-like 310 406 IPR036034 GO:0005515
Spst1g02239 1139 SUPERFAMILY Trypsin-like serine proteases 40 250 IPR009003 -
Spst1g02239 1139 Pfam Trypsin-like peptidase domain 74 226 - -
Spst1g02239 1139 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 20 1136 - -
Spst1g02239 1139 Pfam Peptidase family M50 267 379 IPR008915 GO:0006508
Spst1g02239 1139 SUPERFAMILY Trypsin-like serine proteases 673 872 IPR009003 -
Spst1g02239 1139 Gene3D - 285 378 IPR036034 GO:0005515
Spst1g02239 1139 SUPERFAMILY PDZ domain-like 934 1036 IPR036034 GO:0005515
Spst1g02239 1139 Pfam PDZ domain 311 363 IPR041489 -
Spst1g02239 1139 Gene3D - 907 1006 IPR036034 GO:0005515
Spst1g02239 1139 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Spst1g02239 1139 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Spst1g02239 1139 PRINTS HtrA/DegQ protease family signature 219 236 IPR001940 GO:0004252|GO:0006508
Spst1g02239 1139 PRINTS HtrA/DegQ protease family signature 324 336 IPR001940 GO:0004252|GO:0006508
Spst1g02239 1139 ProSiteProfiles PDZ domain profile. 275 339 IPR001478 GO:0005515
Spst1g02239 1139 Gene3D - 146 262 IPR043504 -
Spst1g02239 1139 Gene3D - 1013 1111 IPR036034 GO:0005515
Spst1g02239 1139 Pfam PDZ-like domain 379 452 IPR025926 -
Spst1g02239 1139 Pfam PDZ-like domain 1011 1086 IPR025926 -
Spst1g02239 1139 Gene3D - 29 139 IPR043504 -
Spst1g02239 1139 CDD PDZ_serine_protease 286 372 - -
Spst1g02239 1139 SMART pdz_new 286 365 IPR001478 GO:0005515
Spst1g02239 1139 SMART pdz_new 908 993 IPR001478 GO:0005515
Spst1g02239 1139 SMART pdz_new 1029 1098 IPR001478 GO:0005515
Spst1g02239 1139 SUPERFAMILY PDZ domain-like 1038 1120 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02239 K22686 - gmx:100809144 2085.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02239 1 30837564 30853923 Spst1g02239 1 30837564 30853923 ECH