Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02224 ATGGAGTCTCCTCAAATAAAGAAATCCGGTTTGAACCTCCCAGCTGGGATGTCCGGAACCTCACTCCGCCTCGACACATTTGCTTCATCGCCTCCATCTTCCTTTCGTTCCATCGCGAGCCTCACTTCTCCTTCTTCTCTTCGTTCCATCTCCAACCTTACTTCACCTTCGAAATCGAGCACGTGCAGCGACAGGTTCATCCCGTGTCGGTCCTCCTCCCGGCTGCACACGTTTGGCCTGGTGGACAGGCCCTCGCCGGTGAAGGAAGGGAGTAACGAGGTGTATTCCAGGTTGTTGAAATGCGAACTCTTTGGATCTGACTTTGCTTCTCCTTCTTCTCTTTCTTCTCCTTCTGCAGGTGCTCCTCCTTCACCGATCAGCCCCAGCAAGAATATGCTCCGCTTCAAGACCGATCACTCCGCTGCGCCGTCCTCCCCCTACTCGCCCTCCATATTGGGGCAGCAGAGTACCTTCGCTTCTGACTCCTCCACGCCACCTCCCAAACCTCCCCGGAAAGTTCTAGATGCTCCATCTCTTCAAGATGACTTTTACTTGAATCTAGTGGACTGGTCCTCACAGAATGTTCTTGCTGTGGGACTAGGCACTTGTGTTTATCTATATAGCGCTTCAAACAGTAAAGTGACTAAGCTATGTGACTTGGGGCCTAATGATGGTGTCTGTTCTGTTCAATGGACCCGGGAGGGTTCTTTTATATCAGTTGGTACAAATCTTGGCCAAGTCCAGGTTTGGGATGGAACTCAGTGTAAGAAGGTCAGAACTATGGGTGGGCATCAGACAAGGACTGGTGTGTTGGCATGGAACTCTCGCATTTTGGCTTCAGGGAGCAGAGATAGGAACATACTTCAGCATGACATGAGGGTTTCAAGTGACTTTATTAACAAGCTTGTTGGCCACAAGTCAGAGGTATGTGGATTGAAATGGTCCTGTGATGACAAGGAACTTGCTTCTGGTGGTAATGATAATCAGCTCCTGGTGTGGAATCAACACTCTCAGCAACCAGCTTTGAGACTTACAGAGCACACTGCTGCTGTTAAGGCCATTGCTTGGTCACCTCACCAAAGCGGTCTCCTTGTATCTGGAGGTGGAACTGCTGATAGGTGCATTCGTTTTTGGAACACTACAAATGGCCATCAATTGAACAGTGTTGACACTGGGAGCCAGGTCTGCAACCTTGTTTGGAGTAAAAATGTGAATGAGCTAGTAAGTACTCATGGATACTCCCAAAATCAGATTATGGTGTGGAAATATCCGTCATTGACAAAGGTTGCAACTCTAACTGGCCATAGCATGAGAGTGCTTTACCTTGCAATGTCCCCTGATGGTCAGACAATAGTAACTGGAGCAGGGGATGAGACTCTCCGGTTCTGGAGTATTTTCCCATCAATGAAAGCACCTGCCACTGTTAAAGATACAGGCCTTTGGTCACTGGGGCGCACTCAAATTCGATGA 1470 0.4891 MESPQIKKSGLNLPAGMSGTSLRLDTFASSPPSSFRSIASLTSPSSLRSISNLTSPSKSSTCSDRFIPCRSSSRLHTFGLVDRPSPVKEGSNEVYSRLLKCELFGSDFASPSSLSSPSAGAPPSPISPSKNMLRFKTDHSAAPSSPYSPSILGQQSTFASDSSTPPPKPPRKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLYSASNSKVTKLCDLGPNDGVCSVQWTREGSFISVGTNLGQVQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFINKLVGHKSEVCGLKWSCDDKELASGGNDNQLLVWNQHSQQPALRLTEHTAAVKAIAWSPHQSGLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPSLTKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWSIFPSMKAPATVKDTGLWSLGRTQIR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02224 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 465 - -
Spst1g02224 489 SMART WD40_4 425 464 IPR001680 GO:0005515
Spst1g02224 489 SMART WD40_4 295 334 IPR001680 GO:0005515
Spst1g02224 489 SMART WD40_4 211 251 IPR001680 GO:0005515
Spst1g02224 489 SMART WD40_4 254 291 IPR001680 GO:0005515
Spst1g02224 489 SMART WD40_4 337 379 IPR001680 GO:0005515
Spst1g02224 489 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 51 480 IPR033010 GO:0010997|GO:0097027|GO:1904668
Spst1g02224 489 Pfam Eukaryotic translation initiation factor eIF2A 318 455 IPR013979 -
Spst1g02224 489 MobiDBLite consensus disorder prediction 42 64 - -
Spst1g02224 489 SUPERFAMILY WD40 repeat-like 170 465 IPR036322 GO:0005515
Spst1g02224 489 MobiDBLite consensus disorder prediction 141 162 - -
Spst1g02224 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 388 IPR001680 GO:0005515
Spst1g02224 489 Gene3D - 164 468 IPR015943 GO:0005515
Spst1g02224 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Spst1g02224 489 MobiDBLite consensus disorder prediction 112 175 - -
Spst1g02224 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 334 - -
Spst1g02224 489 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Spst1g02224 489 FunFam FIZZY-related 2 isoform 1 167 467 - -
Spst1g02224 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 465 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02224 Spst-Chr1 30717616 30720920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02224 299 465 Miscellaneous Gene Families AT5G08390 21.429 2.65e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02224 K03364 - gmx:547741 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02224 1 30717616 30720920 Spst1g02224 1 30717616 30720920 ECH