LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g02119	ATGTCTCTTGGGCCCCTCCAGTCCAAAATCCACGAAGAGAAAAGAACGAAGCACAACGCAACAACAACGATGAGAATCACGTTGGAGCCGAGCTCGGAGCCAAGCCCAAGCCGCTCCCAAACTCCTAAAGACGAAGTCGAGTGGGTCCCACTTCCCAAGCACCCTCTCTTCACCGCACACGGCGGTGCCACCGCCGCCTCTGCTTCTCGGAACCTTCTTGCCTGGGACGGAGCCTCGCGCCTATACTTCTGGGACACAAACAGCCGTTGCCTCCACCGCCTCTCTCTCCGACTTGGCGACCCCGATCCCTCTTCCGTCCTTGCCTCCTCTCCCTCTAAGGTCTCTCTCTCTCTGCATTTGGTTTTTCGGGCAAACAGAATCCAATGCTATGCTAATTCGTTTCCGAATTTGAAACAGGTGTTGCAAGCGGACGCGGTGCTCGATTTCGACGTCCACAAAATCTCCATCAACAGAAACGGAACAGCAATTCTCCTTTTCGGTTCTGAAACGCTCTCTGTTATGTACCTTTACGGACGCACCTCTAAGAAAGACGAGAACTTGATTTGCAGGACTATTACTGTTGGTTCTCAGACCTATTCCACTGGTGGCAATGATATTCGGGTTTTACAAGCATTATGGCACCCTTACAGCGATACACATTTGGGAATTCTTTCGTCTGACTCAGTTTTCCGAATTTTCAACCTGTCCATGGATCCTTTGCAACCAGAGCAAGAATATTATTTACAGCCTGTTGAGCCTGGTAGATCTAGAAATGCCTCATCAGTGTGCCCAGTTGATTTTTCTTTTGGGGGAGACCACTTATGGGACAGGTTTAGTGTTTTTATTTTGTTCAGTAATGGGGCTATTTATGTACTTTGCCCTGTTGTTCCATTTGGCAGTCTCTTCAAATGTGAGTCTTTGGTAGAAATATACAATGATGCTCACACATTTGGAATAATGTCAGCCAACTCTGTTGCTGCGAGTAATTCAAAGTTGGCAATCTCCTGGTTAGAAGCAGCATTTCCTGAGTTACAAAATCAAGAAACTGAAGGAGACAGCCTGTCTTTGCTAAGAGCTCATGCTTATGCTTTATTTGACGCATCTCTTGTCTTGCAGGGACCTCTGCGAAGAGTAGGTCAGGATGGAAATGAAGATTCAGTTGGTTGTAGTGCAGAATGTGAAGGTCGTGCAGTTAGTTTTCTCTACAATTTAGTCAGCAAAGACTCTATTTTGGTGACTGCCTGGAGTGGTGGGCAATTGCAGATAGATGCACTAGCAGATGAGATCCAACCTGTCTGGTGTGTTGGCAGTCCACCTCGTCTTCGTGTTGATTCCCATGACCATATTCTTGGCCTTGCTATGATTTGTGAGTCAATTAACAGCAGCAGTCTGTGGAAGCCTGATCGCAATGCCTGGTTGGGTAACCCACCTCCTTTGCTGAGACTGGCTATTGTTGATCTGGCTCTGCCGCAAAGAGCAGAAAGTGGTTATAATATTTCATTGTTCATTGATATGCTTATGCCAGAAAGGATATATTCCCTTCATGATGGAGGGGTTGACTCAATAGTTTTACATTTTCTTCCATTTACAAGTCAGTCAAATGGCAAGGATGATACAACGAAAACACCGTCTGTACACTCTGTAGTAAATACTTGCCAGAGTGGAAACACCTCAGAACCCTCACTTTGTGGCTTTGTGTCATTATCAGATTCATTTGGATATTCATGGATTGTAGCTATTACACTTTCTCTCGAGTGTGTTGTGCTTGAAATGAAAAGTTGGAATCTCTTGCTTCCAGTAAGCATTGATATGGAGAAACCCATTTCATCAGAGGGGGAATTAAAAGAGAGAGATATACCTTCAATAATTAGCAAAGAACTACTTGGTGGACCAAAGGAGGTACTTGTTCCCCATGCCTCTCCAAGTTTGCGTTCTGTTGCAGCTGATTCAATTGAAGGTCGATCAACACTACATCAGTATTTCAAGCTGTTTCATGAAACTTATGTGGAGTATGGACACAAGGTGTACCTGGAGCTCAAGCATCACGCACCTCAGTTGAAGAAAATCATTAATGACCAACATTCTCGTTTAGGTGATGCACAACAGAAAATTTTGAAAGTTGAGGAGAAAGAGGCTATATTACAGAAAAGGTTAGATCATGCTATTCAAATGCACAATTCTTTGGAAGAGCGCTTGCAACAATTAAGGAACTTACCTTGTGCTCACAAAAAACCACTGTCCAGAGCAGAGCGGCAGTTTAAATCTGAGCTTGACCGCTTTAAGGAAGTTGAATTGGATGCGTTGCATTCTTCTGTTGATGCGCTAAGTGCAAGGTTGAGAAGGCACTTGCAAGCATCGAAAGCTAATCAACAACATAAAACACCAGGGAAGAAAATTCATGCTGGTGACAATCGGATATCCATGCTCAAATCATCGCTTGAAAAACTTTCACTTGTAAATACTGAAAATTCGAAGAAAGTGAAACTCGTGGAGTCTACATTGAGAAACAACGAAAGAAGCAGCAGTAGAGAATCAAGGCCTCCTTTGCTCTAA	2553	0.4422	MSLGPLQSKIHEEKRTKHNATTTMRITLEPSSEPSPSRSQTPKDEVEWVPLPKHPLFTAHGGATAASASRNLLAWDGASRLYFWDTNSRCLHRLSLRLGDPDPSSVLASSPSKVSLSLHLVFRANRIQCYANSFPNLKQVLQADAVLDFDVHKISINRNGTAILLFGSETLSVMYLYGRTSKKDENLICRTITVGSQTYSTGGNDIRVLQALWHPYSDTHLGILSSDSVFRIFNLSMDPLQPEQEYYLQPVEPGRSRNASSVCPVDFSFGGDHLWDRFSVFILFSNGAIYVLCPVVPFGSLFKCESLVEIYNDAHTFGIMSANSVAASNSKLAISWLEAAFPELQNQETEGDSLSLLRAHAYALFDASLVLQGPLRRVGQDGNEDSVGCSAECEGRAVSFLYNLVSKDSILVTAWSGGQLQIDALADEIQPVWCVGSPPRLRVDSHDHILGLAMICESINSSSLWKPDRNAWLGNPPPLLRLAIVDLALPQRAESGYNISLFIDMLMPERIYSLHDGGVDSIVLHFLPFTSQSNGKDDTTKTPSVHSVVNTCQSGNTSEPSLCGFVSLSDSFGYSWIVAITLSLECVVLEMKSWNLLLPVSIDMEKPISSEGELKERDIPSIISKELLGGPKEVLVPHASPSLRSVAADSIEGRSTLHQYFKLFHETYVEYGHKVYLELKHHAPQLKKIINDQHSRLGDAQQKILKVEEKEAILQKRLDHAIQMHNSLEERLQQLRNLPCAHKKPLSRAERQFKSELDRFKEVELDALHSSVDALSARLRRHLQASKANQQHKTPGKKIHAGDNRISMLKSSLEKLSLVNTENSKKVKLVESTLRNNERSSSRESRPPLL	850

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g02119	850	Pfam	Nuclear pore component	67	270	IPR019321	-
	Spst1g02119	850	Pfam	Nuclear pore component	497	830	IPR019321	-
	Spst1g02119	850	MobiDBLite	consensus disorder prediction	21	42	-	-
	Spst1g02119	850	PANTHER	NUCLEOPORIN NUP84-RELATED	39	839	IPR037700	GO:0000055\|GO:0000056\|GO:0006913\|GO:0017056
	Spst1g02119	850	MobiDBLite	consensus disorder prediction	1	45	-	-
	Spst1g02119	850	SUPERFAMILY	WD40 repeat-like	69	290	IPR036322	GO:0005515
	Spst1g02119	850	Coils	Coil	697	738	-	-
	Spst1g02119	850	MobiDBLite	consensus disorder prediction	830	850	-	-
	Spst1g02119	850	MobiDBLite	consensus disorder prediction	784	804	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g02119	K14318		-	gmx:100801853	1379.39

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst1g02119	1	29344983	29351567	Spst1g02119	1	29344983	29351567	ECH