Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02023 ATGGAGACGCACAGCCACGACCAGGATCCTACCAAACCAGTGGTTCTCATCACAGGATGTTCCACGGGAGGGATAGGCCACGCGCTTGCGTGCGCGTTCGCGGAGAAGAAGTGCAGGGTGGTGGCGACGAGCAGGTCGCGGTCGAGGATGACGGAGCTGGAACACGACAGCAGGTTTGTGTTGGAAGAGTTGGATGTTCAGTCCGATGAGAGCGTGCGCAGAGTGGTTGACGCTGTTGTCGGAAAGTACGGTTGCATCGACGTGCTCGTAAACAACGCGGGTGTTCAGTGCGTGGGTCCGCTTGCCGAGATTCCTCTCTCTTCCGTCCAAAATACTTTCGATACCAATGTTTTCGGTTCCTTGAGAATGGTTCAGGCGGTTGTCCCTCATATGGCAACTAGGAGAAAGGGAAAGATTGTAAATATTGGTAGTGTCGCTGCCTTGGCTTCTGGACCTTGGTCAGGCACTTATACAGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGATTGGAACTTGGACATTTCGGAATTGATGTTGTCAATGTTGTACCCGGAGCTATCAAATCAAATATAGGAGATTCTGCTATAGCCAGCTACAACCGCATGCCTGAATGGAAATTGTTCAAGCCTTTTGAAGCAGCAATCCGAGACAGAGCTTACTTTTCTCAGAAATTAAAATCAACACCAACAGATGAGTTTGCTAAAAACACTGTAGCTGCTATTCTGAAGGAAAAACCGCCAGCATGGTTTACCTATGGGCATTACTCTACTGTCATGGCTATCATGTACCATTTACCAATCTCTGTTAGAGATTTTATTTTGAAGAAAGTTATGAACGGCTGA 852 0.4754 METHSHDQDPTKPVVLITGCSTGGIGHALACAFAEKKCRVVATSRSRSRMTELEHDSRFVLEELDVQSDESVRRVVDAVVGKYGCIDVLVNNAGVQCVGPLAEIPLSSVQNTFDTNVFGSLRMVQAVVPHMATRRKGKIVNIGSVAALASGPWSGTYTASKAALHALTDTLRLELGHFGIDVVNVVPGAIKSNIGDSAIASYNRMPEWKLFKPFEAAIRDRAYFSQKLKSTPTDEFAKNTVAAILKEKPPAWFTYGHYSTVMAIMYHLPISVRDFILKKVMNG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02023 283 Gene3D - 12 273 - -
Spst1g02023 283 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Spst1g02023 283 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Spst1g02023 283 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Spst1g02023 283 PRINTS Glucose/ribitol dehydrogenase family signature 15 32 IPR002347 -
Spst1g02023 283 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Spst1g02023 283 Pfam short chain dehydrogenase 14 197 IPR002347 -
Spst1g02023 283 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 193 - -
Spst1g02023 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 273 IPR036291 -
Spst1g02023 283 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 11 263 - -
Spst1g02023 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Spst1g02023 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Spst1g02023 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Spst1g02023 283 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Spst1g02023 283 CDD 17beta-HSD-like_SDR_c 14 259 - -
Spst1g02023 283 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 12 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02023 Spst-Chr1 28482746 28484485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02023 14 194 Acyl Lipid Metabolism Gene Families AT1G62610 31.443 4.69e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02023 - - gmx:100789660 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02023 1 28482746 28484485 Spst1g02023 1 28482746 28484485 ECH