Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02020 ATGTTACCAGCTGCTGTGGAAATGAGACCCACTCGGTATTACTTCAGGGTTCCCTCACGGAACGGAACAAAAGGCGCACACAATCGCCATAGAGAAAAGAACCCTCCACCAAACAAAAAAAGCCCTAGAAAAGATTTTGAAGAACCAATTTCTCACTCCACAAAATCTCAACCTCTTCTTTTATTTTTTGTTTTGGATAAAACGAAGAAAGGGACACGAGTAATACAGGAGAGTGCATTCCTTTCGGTTCTTCGGTTAAGGACACTAATCTTCGATGCCTCTGTGTTTTTTCTTCTCTTTTCTCAAATTAGGGTTTTCGTGAGCGCTGAGGAAGGTGATTTGTGTTTGGGCAAAATGTCGCCAAAATATCAGATTCTGGATAATCGCCCAATTCATCAGTGGAAGGTTACCGAGCTGAAAGATGAGCTGAAGAGAAGGAAGTTAAGCACCAAAGGTTTGAAGGATGATTTGGTCAAGCGTTTGGATGAATGCCTTCGTCTTGAAAGGGAGGCTGAGGAGGCTTCTGAGAAGGAGGAGGAGGCCAATGGTTTTGATGGTCATGTAGATGGGAAAAAAGATTCAGAGGCTGTTACTGTGGATGCTGTAGTTGTTGATGCAACTAACAAGGCGAGCACCAAAACATTTGAGACTGCTGGTATGGGGAAGAGTGATGTAGTTCAACCGATTGAAACAGAAAATGTGGAAAAGGTTCCAGAGGTTGTTGTTCAAGAAAGCAGTAAGAATGACAAGCAGGGTGGTGTTACTGGCCAACTTGACATTAATAATAATGTGCCAGATATGGATCAAGAGGTTGAACATAAGGGCTTGCCCGCAGCTGGTGGAGATTCTGGAAATGAGGGAGAGGAGTCAATTACTTATGCTTCTACTGTAGCGACCACCATTACAGTCACTGAAAGTGTAGTAACAGAAGTGGTAGCCAGTGGTGAGGTTTCATATTGTGTAGAAAAGAATAATGAGGATTCTGCAGCAAAGCTGGATAATGAGGAGTCAAAGGCGCAGCTGGATGGTGAGGACACAAAGCCCCTACTGGATTCTGACACAAAGCCCTTGCACGAGGATCTTGTGCCCGACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAAGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTCTTATGATGAATCACATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCATCTGTTGAAGAAAATATCAATAATGTTTCAAGTCCGGACTTGAACAAGACCAATAGCAGTGATGATGTTGGGTATCCAGAAAAATTGAATCTAGACAGAAGTTCTGGTGATGATTCTATGGAAGAGGATTTACCTGAGACTAAGCAAATTGATTCTATGTTTAATGTCGATGAACTTAGAGAGAAAGTGGAGAGTATTGAAGAGCCTATTGTGAAGGAGGAAAGTAGTACTATAGCTGTGGGGGATGGTCTATCTGCAGGAAAAATTGATGCCCACCAAGATATTGACATCAGTCCTGTTGCCCCAACTGAGAAACGAAAATTCCTTGAACAATCATTGGTTGGGAACAATGAGCCGTCAAAAAGGCAACGCAGGTGGAGCACTGAAGCAGTTAAAGGTCTAGATCCACAAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGATGAGCCAATTGCTCTGAAACGCAATCTCTCTAGGTCTGATTCCTCTGCTACTGATGACACACCTAAAGAACGCATTGTTCCACCATCACAAAGGTCCCCAACTAATTCCCTCAGGATTGATCGTTTCCTCCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGTAAGACTGGGAATGTCCGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCGTCTGTTGAAGAAGCCATTGAGACACGGAAATCTGTGTATAATTTGCAATGGCCACCAAATGGTGGACGTCTCTTAGTTGCCGAGTATGTTGATCCTGAAGAAGTGTTAATGAAGTTAGAACCTCCTCCTGCTCAGGTTGCTCCAGTAGTTCCTCCTGTGCCCCCCGCATCACAGCCAGAACCTTCCCCTCGGCTGCACAGGGAGCAGCATTCAGTTCCAACTACACTCCCACCTCCCCCACCATTGTCAAAACCCCCACCAGTAGTAAGAGAACGGCTTCCATCTCCACCACCCCTTCCAGAGAAAGTTGACCCACCTATTGTCACTTTGGATGATCTCTTCCGCAAAACCACGGCAACTCCTCGGATCTACTACTTGCCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTTGCTGCACAGGGTAAAAGCATGAGGCAGTAG 2475 0.44 MLPAAVEMRPTRYYFRVPSRNGTKGAHNRHREKNPPPNKKSPRKDFEEPISHSTKSQPLLLFFVLDKTKKGTRVIQESAFLSVLRLRTLIFDASVFFLLFSQIRVFVSAEEGDLCLGKMSPKYQILDNRPIHQWKVTELKDELKRRKLSTKGLKDDLVKRLDECLRLEREAEEASEKEEEANGFDGHVDGKKDSEAVTVDAVVVDATNKASTKTFETAGMGKSDVVQPIETENVEKVPEVVVQESSKNDKQGGVTGQLDINNNVPDMDQEVEHKGLPAAGGDSGNEGEESITYASTVATTITVTESVVTEVVASGEVSYCVEKNNEDSAAKLDNEESKAQLDGEDTKPLLDSDTKPLHEDLVPDSSVPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDESHSMDVGGLHEKKASVEENINNVSSPDLNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETKQIDSMFNVDELREKVESIEEPIVKEESSTIAVGDGLSAGKIDAHQDIDISPVAPTEKRKFLEQSLVGNNEPSKRQRRWSTEAVKGLDPQSTTPRPATTPRDEPIALKRNLSRSDSSATDDTPKERIVPPSQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVRSFWMDQIKTHCYVTYSSVEEAIETRKSVYNLQWPPNGGRLLVAEYVDPEEVLMKLEPPPAQVAPVVPPVPPASQPEPSPRLHREQHSVPTTLPPPPPLSKPPPVVRERLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSMRQ 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02020 824 MobiDBLite consensus disorder prediction 604 620 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 725 739 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 477 497 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 328 362 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 170 191 - -
Spst1g02020 824 SMART sap_9 131 165 IPR003034 -
Spst1g02020 824 Coils Coil 157 181 - -
Spst1g02020 824 SUPERFAMILY SAP domain 131 168 IPR036361 -
Spst1g02020 824 SUPERFAMILY RNA-binding domain, RBD 628 712 IPR035979 GO:0003676
Spst1g02020 824 MobiDBLite consensus disorder prediction 560 634 - -
Spst1g02020 824 Gene3D SAP domain 131 182 IPR036361 -
Spst1g02020 824 MobiDBLite consensus disorder prediction 457 475 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 328 392 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 417 442 - -
Spst1g02020 824 Pfam SAP domain 133 162 IPR003034 -
Spst1g02020 824 CDD RRM_ACINU 634 713 IPR034257 -
Spst1g02020 824 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 121 823 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 17 52 - -
Spst1g02020 824 ProSiteProfiles SAP motif profile. 131 165 IPR003034 -
Spst1g02020 824 MobiDBLite consensus disorder prediction 23 37 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 751 782 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 457 497 - -
Spst1g02020 824 MobiDBLite consensus disorder prediction 725 784 - -
Spst1g02020 824 Pfam RNSP1-SAP18 binding (RSB) motif 780 822 IPR032552 -
Spst1g02020 824 MobiDBLite consensus disorder prediction 366 392 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02020 K12875 - gmx:100786288 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02020 1 28472586 28476067 Spst1g02020 1 28472586 28476067 ECH