Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02018 ATGCGGTGGCCGTTGCTGCTGTTGTTGTGGTTGATGGAGGTAACGGCACGCGCAATGCCGCTTCCGATCACGTTTTCCTCGCGCCTAGTTCACCGGTTCGCTGACGAAATCAAACCGGTTCGAATTCCGACCGGCGACTGGCCAGACCGGCGGAGCATGCGATACTACCAGGTGCTTCTCGCCGACGACATTCTCAGACGCAAGATTAAACTCGGAGACGCTCGCTACCAGCTTCTGTTTCCTTCTCATGGTAGCAAAACGATGTCTCTGGGCAACGACTTCCGCTGGTTACATTACACGTGGATTGATATAGGAACACCGAGTACTTCGTTTCTTGTGGCGTTGGACGCGGGAAGTGATCTTCTTTGGATTCCGTGTGATTGCGAACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGATAGAGATCTGAATGAGTATAGTCCGTCTCGATCGTTATCCAGTAAGCATCTATCTTGCAGTCATCAGTTGTGTGATAAGGGTTCGAATTGTAAAAGTTCCCAGCAGCAGTGTCCGTACATGGTCAGTTACTTGTCAGAGAATACATCGAGTTCTGGACTGTTAGTTGAGGACATATTGCATCTTCAGTCGGGTGGCAGTTTATCAAACTTGTCTGTTCAGGCCCCAGTTGTTCTAGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGAATGGGGTTGCCCCCGATGGCCTATTAGGCTTGGGACCTGGGGAAAGTTCAGTTCCAAGTTTTCTAGCCAAATCAGGACTAATTCACAATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATGTTTTTTGGGGACCAGGGACCAACCATCCAACAGTCTACTCAATTCTTGCCTTTGGATGGATCATATTCAACGTACATTGTTGGAGTGGAGTCATGTTGTATTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGCACAGGTTGATAGCGGCACGTCTTTTACGTTTCTTCCTGGCCATGTTTATGGAGCAATAGCCGAGGAGTTTGATCAACTAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTACCCAGTTCACAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCATGTTCCAACAGAATAACAGTTTTGTGGTCTATGATCCCGTTTTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATACAGCCAACTGAAGGGGATATGGGAGCAATTGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGAAAACAAGAAGCTAGCGTGGTCTCGCTCAAATTGTCAGGATCTTAGTCTAGGTAAGAGGATGCCGCTTTCTCCAAATGAGACTTCTTCAAATCCCTTACCTACAGACGAGCAACAAAGAACGAACGGGCATGCAGTTGCCCCAGCTGTTGCTGGGAGAGCTCCCCACAAACCTTCAGCCGCTTCGTCTCGGATGATTTCATCATGCCGGGTACATTGGCACTGCTATTTGTTTCTTCTATTTCAACTTGTGTCTGCCTTTTACTGA 1569 0.4614 MRWPLLLLLWLMEVTARAMPLPITFSSRLVHRFADEIKPVRIPTGDWPDRRSMRYYQVLLADDILRRKIKLGDARYQLLFPSHGSKTMSLGNDFRWLHYTWIDIGTPSTSFLVALDAGSDLLWIPCDCEQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSHQLCDKGSNCKSSQQQCPYMVSYLSENTSSSGLLVEDILHLQSGGSLSNLSVQAPVVLGCGMKQSGGYLNGVAPDGLLGLGPGESSVPSFLAKSGLIHNSFSLCFNEDDSGRMFFGDQGPTIQQSTQFLPLDGSYSTYIVGVESCCIGNSCLKMTSFKAQVDSGTSFTFLPGHVYGAIAEEFDQLVNGSRSSFEGSPWEYCYVPSSQELPKVPSLTLMFQQNNSFVVYDPVFVFYGNEGVIGFCLAIQPTEGDMGAIGQNFMTGYRLVFDRENKKLAWSRSNCQDLSLGKRMPLSPNETSSNPLPTDEQQRTNGHAVAPAVAGRAPHKPSAASSRMISSCRVHWHCYLFLLFQLVSAFY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02018 522 Gene3D Acid Proteases 282 448 IPR021109 -
Spst1g02018 522 PRINTS Pepsin (A1) aspartic protease family signature 104 124 IPR001461 GO:0004190|GO:0006508
Spst1g02018 522 PRINTS Pepsin (A1) aspartic protease family signature 322 333 IPR001461 GO:0004190|GO:0006508
Spst1g02018 522 PRINTS Pepsin (A1) aspartic protease family signature 418 433 IPR001461 GO:0004190|GO:0006508
Spst1g02018 522 MobiDBLite consensus disorder prediction 451 477 - -
Spst1g02018 522 Gene3D Acid Proteases 85 280 IPR021109 -
Spst1g02018 522 MobiDBLite consensus disorder prediction 451 476 - -
Spst1g02018 522 Pfam Xylanase inhibitor C-terminal 320 442 IPR032799 -
Spst1g02018 522 ProSiteProfiles Peptidase family A1 domain profile. 98 442 IPR033121 -
Spst1g02018 522 Pfam Xylanase inhibitor N-terminal 99 280 IPR032861 -
Spst1g02018 522 SUPERFAMILY Acid proteases 94 447 IPR021109 -
Spst1g02018 522 FunFam Aspartyl protease family protein 1 84 280 - -
Spst1g02018 522 FunFam Aspartyl protease family protein 1 283 448 - -
Spst1g02018 522 PANTHER ASPARTYL PROTEASES 63 439 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02018 Spst-Chr1 28414498 28418421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02018 91 449 Miscellaneous Gene Families AT1G44130 27.013 3.01e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02018 - - gmx:100817311 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02018 1 28414498 28418421 Spst1g02018 1 28414498 28418421 ECH