Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02001 ATGTCATCAATATTTGGGCGACGTAGTTCATCACAGAAAACAAATTCTGCAGGTTCTTCTCTAGTGAACAACAATTTTGGAAATTCGCCAAATGATAAAGATTCAAAATGGGAATGTGTTGATTCTGACGATGCTGTTTCAATTAGAAAAGCTTCAAATAATGATGTTACAAACTCCTCATCTCATTCCATATCCAATCCTCGTAAGTCAACAAATGTTGTTAGCCAAGGAAAAGCACAAAATCCAAACGAAACAAAAATAAGAAAAAGCCTCTCACCCACTCAGGGTTATGTAAATAAAGGGAAAAGGAATCCAAAAGAAGATTTTAGCATCTCTGGTGAACTTGAAAGCATGATCAATGATCAACTAATGTTCAAGGGTTCCAACAATGTAAGCATGTATGGTACTTTGGGTAACCTTAGAGGAGGGGGAGCTGGATTGGATCATAATCATTATAATGAAATGAATTACTATGCCGGTAATGTTTCTAATGGAGGACGCACGGATAGACCCATAGGACGTGAATATGGTAATAGTAATTACAACAAAGAAACTAAACCAAGGAAGGAACAATCAAATTTACCTTGTAGGACTTTGTCTACGAGAATGGTGGATCCTGAGCAATTGAAGATAATGGGCAATGAAGATTACAAAAATGGAAGGTTTTGTGAAGCCTTAGCTCTGTATGATGCTGCCATCGAAATTGACCCCCAAAAGGCCTTTTACAGGAGTAATAAAAGTGCTGCATTAACTGCTCTTGGAAGGCTTTTAGAGGCTGTTTTTGAATGTAGGGAAGCCATTCGAATTGATTCTCATTACCAAAGAGCACATAATCGATTGGGAAAATTGCACTTTAGACAAGCCGGACCAGAAGCTGATCCAGATGAGATTGCTAAAGTAAAGATTCTCCAAGTACATCTAAACAAATGTACTGAGGCTCGTAGGTTGGGTGATTGGAACACACTCATAAAAGAAACCAACACTGTTCTATCATCTGGTGCAGATTCTGCTCCACAAATATATGCATTACAAGCCGAATCGCAGCTAAAGCTTCTTAAACATGAAGATGCAGACAAAGTAATGTCGAAATGCCCAAAATTTGATGTGGATGATTGTACCAAGTTCTTTGGACCAATTGGTAATGCAAACTTATTGGTGACATGGGCTCAAGTTGATTTAGTTAATGGCAGATTTGAAAATGCTTTGGAGGCAGCACAAAAAGCAATGAAGCTAGATCCAAATAGTGGGGAGGCAAATAAGGTGTTAAGAAATGTTCGAGGTGTGATAAGTGCTCGTACAAAAGGAAACGAACTTTTCAAGGCATCAAAATTTAACGAGGCTTGCATTGTCTATGAAGAAGGCATCGAACATGACCCATATAACTCTATTTTACTATGCAATAGAGCTGCTTGTAGATCAAAATTGGGTCAGTTTGATAAAGCCATTGATGATTGCATCCTTGCCCTTAACTTACGCCCATCTTACACTAAGGCTAGGTTGAGAAGGGCATTTTGTAATGCTAAGTTGGAAAGATGGGAAGCTGCAATACAAGACTACAAAATCTTGTTAAAAGAGACACCAGAAGATGAAGAAGTAAAACGAGCATTGCTGGAAGCCCAGGCACAGCTTAAGCAACAAAGGGCTGCACCAGCTTCTTTGGCAGTTGTCTAA 1671 0.3884 MSSIFGRRSSSQKTNSAGSSLVNNNFGNSPNDKDSKWECVDSDDAVSIRKASNNDVTNSSSHSISNPRKSTNVVSQGKAQNPNETKIRKSLSPTQGYVNKGKRNPKEDFSISGELESMINDQLMFKGSNNVSMYGTLGNLRGGGAGLDHNHYNEMNYYAGNVSNGGRTDRPIGREYGNSNYNKETKPRKEQSNLPCRTLSTRMVDPEQLKIMGNEDYKNGRFCEALALYDAAIEIDPQKAFYRSNKSAALTALGRLLEAVFECREAIRIDSHYQRAHNRLGKLHFRQAGPEADPDEIAKVKILQVHLNKCTEARRLGDWNTLIKETNTVLSSGADSAPQIYALQAESQLKLLKHEDADKVMSKCPKFDVDDCTKFFGPIGNANLLVTWAQVDLVNGRFENALEAAQKAMKLDPNSGEANKVLRNVRGVISARTKGNELFKASKFNEACIVYEEGIEHDPYNSILLCNRAACRSKLGQFDKAIDDCILALNLRPSYTKARLRRAFCNAKLERWEAAIQDYKILLKETPEDEEVKRALLEAQAQLKQQRAAPASLAVV 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02001 556 SMART tpr_5 496 529 IPR019734 GO:0005515
Spst1g02001 556 SMART tpr_5 206 239 IPR019734 GO:0005515
Spst1g02001 556 SMART tpr_5 382 415 IPR019734 GO:0005515
Spst1g02001 556 SMART tpr_5 428 461 IPR019734 GO:0005515
Spst1g02001 556 SMART tpr_5 240 273 IPR019734 GO:0005515
Spst1g02001 556 SMART tpr_5 462 495 IPR019734 GO:0005515
Spst1g02001 556 ProSiteProfiles TPR repeat profile. 382 415 IPR019734 GO:0005515
Spst1g02001 556 SUPERFAMILY TPR-like 433 549 IPR011990 GO:0005515
Spst1g02001 556 Pfam Tetratricopeptide repeat 451 482 - -
Spst1g02001 556 MobiDBLite consensus disorder prediction 50 109 - -
Spst1g02001 556 MobiDBLite consensus disorder prediction 1 38 - -
Spst1g02001 556 MobiDBLite consensus disorder prediction 1 32 - -
Spst1g02001 556 MobiDBLite consensus disorder prediction 50 99 - -
Spst1g02001 556 Gene3D Tetratricopeptide repeat domain 204 548 IPR011990 GO:0005515
Spst1g02001 556 ProSiteProfiles TPR repeat profile. 206 239 IPR019734 GO:0005515
Spst1g02001 556 SUPERFAMILY TPR-like 206 417 IPR011990 GO:0005515
Spst1g02001 556 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 9 548 IPR044534 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02001 Spst-Chr1 28286560 28290773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02001 396 538 Glycosyltransferase AT3G04240 26.667 1.90e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02001 - - gmx:100811282 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02001 1 28286560 28290773 Spst1g02001 1 28286560 28290773 ECH