Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01999 ATGGATGCAAGTATTGTTCCAATGTCCCCTATTTTGCTGAATTCACTGCTTCACACACTCTGCACCACGAGTGAATTCGATGAATCTGCTTTGAAAACTTTATTACTTGCATCTGGTATCTTAATTGCTGGTGGAACAGCTGCATATATGCAATCAAGGTTTAGAGTTAATCAACCTGATTTATTTGGCCATTGCAATGGGCACAACAATGATAGAGAAGTCACAGAGGAGGAGGTTGGGAGGGGTGTTAATGCATCAAAAAATAAACAAAAGAAAGGGTTGAAGTCACTCCAACTCCTTGCTTCAATTCTACTATCTGACATGGGCAAATTAGGTGCAAGGGATCTTTTAGGTTTAGTTGCCATAGCGGTGTTGCGAACTGCTTTGAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACATGTAAGTAAAACAGAAGGTCAAAGTTCTGATGATCCTGATGGCTATTTTGTGGATCTTGGGCGGCTCCTGCCCTGGACCATTCGGGATGCTTTTCCAGATCTCCTTAACATGGTGTATTACAAAATATCACATGTTGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTTCAGAGTTGAGTGAAATTGTACAAGATGATCTCACAGCAGTTACTGATGGACTTCTATATACTTGGCGTTTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATATTGGCATATGTACTTGTAGCTGGTGCTGCAATCAGAAACTTCTCTCCTTCATTTGGAAAACTTATGTCCAAAGAGCAGCAATTGGAAGGAGAGTATCGACAGCTTCACTCACGATTGAGGACTCACTCAGAAAGCATAGCATTCTATGGTGGAGAGAGGAAAGAAGAAGCTCATATTCAACAGAAGTTTAAAACCTTGGTCGGGCATGTGCATAGTGTGCTACATGACCATTGGTGGTTTGGCATGATTCAGGACTTATTATTGAAGTATCTTGGTGCTACTGTTGCTGTTATTTTGATTATTGAACCTTTCTTTTCTGGTCATTTAAGGCCCGACAGTTCAACTTTAGGGCGTGCGGAGATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATCTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGTGGATATGCTGATCGCATTTATGAATTAATGGCTGTATCAAGGGACCTAAGTTTGGTGGATGAGAAATCCTCCCTTCAAAGAAAAGCAAGTAGAAATTGCATTAGTGAAGCTAACTACATTGAATTTGATGGTGTCAGCGTTGTGACCCCCACTGGTAATGTCTTGGTGGATGATCTGACTCTTAGGGTTGAATCAGGATCAAATCTTTTGATTACAGGTCCAAATGGCAGTGGCAAAAGCTCTCTTTTCCGGGTTCTAGGTGGCCTTTGGCCGTTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCTTAATAAGGAAATTTTCTATGTGCCCCAAAGGCCATATACTGCTGTAGGAACACTTCGAGATCAGTTGATTTATCCTCTTACTACAGATCAAGAGGTCAAATCACTCACAGATCATGGGATGGTGGAGCTGCTAAAAAATGTTGACCTTGAATACCTATTGGATCGTTACCCTCCTGAAAAGGAGGTAAACTGGGGTGAGGAACTTTCATTGGGTGAGCAACAGAGATTGGGCATGGCAAGACTTTTCTACCATAAGCCTAAATTTGCAATTCTAGATGAGTGCACAAGTGCTGTGACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTTAGGGCAATGGGAACATCATGCATTACCATATCACATCGTCCAGCATTAGTTGCATTTCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTACATTATAAAAGAGAGGGCTCCTCTGCTGAAGTGGAGATTAATAAGCTGAAGGCATCAGAAACAAAACGACAAAGTGATGCAAAGACAGTTCAACGTGCATTTACTGCTAGCAAAAGGGATTCTACTTTCTCAAATCCAAAGGCACAGTTGTATTTTTCAGAGGTGATATCATCATCTCCATCTATGAATCATACAAATTCACCATCTGTTGTTCCCCAACTCCGTTGTAATACAAGGATATTGCCGCTGAGAGTAGCTGCCATGTGCAAAGTATTGTATGAGATTACTCCGTTTTGGCACCTCAAATTAGAGGTTGTGAATAAGGTTACTTATATCTGGTTTGAGTTAAAATATTTGATCAACAGTGGTGTTGATAGGGACAATGGTGGTAGTCGATTGAGTGGTGGTCAGTGA 2367 0.4132 MDASIVPMSPILLNSLLHTLCTTSEFDESALKTLLLASGILIAGGTAAYMQSRFRVNQPDLFGHCNGHNNDREVTEEEVGRGVNASKNKQKKGLKSLQLLASILLSDMGKLGARDLLGLVAIAVLRTALSNRLAKVQGFLFRAAFLRHVSKTEGQSSDDPDGYFVDLGRLLPWTIRDAFPDLLNMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLVAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGERKEEAHIQQKFKTLVGHVHSVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRDLSLVDEKSSLQRKASRNCISEANYIEFDGVSVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTTDQEVKSLTDHGMVELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSSAEVEINKLKASETKRQSDAKTVQRAFTASKRDSTFSNPKAQLYFSEVISSSPSMNHTNSPSVVPQLRCNTRILPLRVAAMCKVLYEITPFWHLKLEVVNKVTYIWFELKYLINSGVDRDNGGSRLSGGQ 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01999 788 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 441 672 IPR003439 GO:0005524
Spst1g01999 788 SMART AAA_5 466 645 IPR003593 GO:0016887
Spst1g01999 788 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 202 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g01999 788 SUPERFAMILY ABC transporter transmembrane region 202 411 IPR036640 GO:0005524|GO:0016020
Spst1g01999 788 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 184 651 - -
Spst1g01999 788 CDD ABCD_peroxisomal_ALDP 441 649 - -
Spst1g01999 788 Pfam ABC transporter transmembrane region 2 184 353 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g01999 788 Gene3D ABC transporter type 1, transmembrane domain 96 416 IPR036640 GO:0005524|GO:0016020
Spst1g01999 788 Gene3D - 426 700 IPR027417 -
Spst1g01999 788 Pfam ABC transporter 458 603 IPR003439 GO:0005524
Spst1g01999 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 645 IPR027417 -
Spst1g01999 788 ProSitePatterns ABC transporters family signature. 575 589 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01999 Spst-Chr1 28206069 28217972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01999 32 743 Acyl Lipid Metabolism Gene Families AT4G39850 72.480 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01999 K25819 - gmx:100791623 1195.26