Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01996 ATGAGAAAAAGGCAATCTTTGCGCAACAAAGCGACCCACTTTGTTTCTGTCCTTCTCAACCCCATCTCTGATTCCGACACTACCAAACCCTCCAAACACCCTCCAACCGCTCCAACACCAACACCTCCTTCTGGAGAAGTAGGTGGATCAGGGACAAATGTTGAAGAGAGTAACCTTGGTTTAGCTGATGGGCCTGATACTTCGTCCTTCACTGCGTTTCTCTATTCTTTATTGTCTTCCTCTGACACTGGAGATAATGCAAGCTCGCACGTGCAGAGTGATGATGACAAAGGTGCTGCACCTGATCACAGCCCTTTACCAGACTCGTTGCTGAAGGAAAATGGTGGGAGGAAAAGTTTGTTTTCCAAAAGCAAGCTATCACTTGGAAGAGCCATTCGCAGAATGGGTGGAGTTCGCCATCATGGTCGCAGGGATAATCTTGAAATGAAATTGGATGACGGGGGTGGTTCTAAGGCTGCTGGTGTTGTTGAAATGAGGCGTATTGAACCTGTGGAAGAATCTCTGACTGTGCCTTTGGTTGATCTTCCAGAAATTTCTGAGCCATCGGTTCTCCTTTCAGATAGTATAAGGAATGTTCTCTATGTTTCTCTTCCACCCCTTGTTCACGGAAGGAAATGGCTGCTATTATACAGCACTTGGAGACATGGTATATCACTTTCCACTCTTTACCGGAGAAGCATGATTTGGCCTGGATTGAGTTTGCTGATTGTTGGAGATAAAAGAGGAGCAGTATTTGGAAGCATGGTTGAGGCACCTCTCAGATCATCTACCAAGAAAAAATACCAGGGAACAAACAATACATTCGTTTTCACAAATATCTCTGGTCAACCTGTTATATATCGTCCAACAGGAGTAAACCGCTATTTCACACTTTGCAACACTGACTACTTAGCAATTGGTGGAGGAGGTCATTTTGCACTTTATTTGGATGGTGATCTATTGAATGGTTCAAGTTCAGTCTCAGAAACTTATGGGAATCCTTGCCTCGCAAATTCTCAGGACTTTGAAGTGAAGGAAGTAGAGTTATGGGGCTTTGTATATGCTTCAAAATATGAGGAAGTGCTGGCAATGAGCAGAACAGAAACACCTGGGATCTGCCGATGGTAA 1128 0.4433 MRKRQSLRNKATHFVSVLLNPISDSDTTKPSKHPPTAPTPTPPSGEVGGSGTNVEESNLGLADGPDTSSFTAFLYSLLSSSDTGDNASSHVQSDDDKGAAPDHSPLPDSLLKENGGRKSLFSKSKLSLGRAIRRMGGVRHHGRRDNLEMKLDDGGGSKAAGVVEMRRIEPVEESLTVPLVDLPEISEPSVLLSDSIRNVLYVSLPPLVHGRKWLLLYSTWRHGISLSTLYRRSMIWPGLSLLIVGDKRGAVFGSMVEAPLRSSTKKKYQGTNNTFVFTNISGQPVIYRPTGVNRYFTLCNTDYLAIGGGGHFALYLDGDLLNGSSSVSETYGNPCLANSQDFEVKEVELWGFVYASKYEEVLAMSRTETPGICRW 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01996 375 SMART 109ultra 189 353 IPR006571 -
Spst1g01996 375 MobiDBLite consensus disorder prediction 10 32 - -
Spst1g01996 375 MobiDBLite consensus disorder prediction 1 65 - -
Spst1g01996 375 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 19 354 - -
Spst1g01996 375 Pfam TLD 215 352 IPR006571 -
Spst1g01996 375 ProSiteProfiles TLDc domain profile. 190 353 IPR006571 -
Spst1g01996 375 MobiDBLite consensus disorder prediction 81 115 - -
Spst1g01996 375 MobiDBLite consensus disorder prediction 43 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01996 Spst-Chr1 28166445 28169302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01996 212 360 EF-hand Containing Proteins AT5G06260 30.189 4.10e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01996 - - gmx:100804124 618.231