Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01992 ATGGGTGCTGCGGGCTCTAAGCTCGAGAAGGCTCTCGGCGACCAATTCCCCGAAGGAGAACGTTACTTCGGCCTCGAGAATTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCACTATACTTCTGTGTTCCATTTCGAGAACAATTGCTAGAGTATTATGCAAACAACAGAAGCTTGGCCGATGGCGAGGAAAATCTTTTAACTTGCTTAGCCGACTTATTTTCGCAGATAAGTTCCCAGAAGAAGAAAACGGGTGTTATAGCTCCCAAACGATTTGTTCAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCTCACGAATTCTTGAACTTTTTGCTAAATGAACTTGTTGACATTCTGGAGAAAGAGACTCAGTCTGCCAAAAATGATCATGAAACATCACCACCTTCCGAAAAGACTGCAAATGGACCTAAGAATGGTCTAGCTAATGGTGCTAAAAAAGAGCCTTTAGTTACTTGGGTGCACAAAAATTTTCAGGGAATACTCACCAACGAAACAAGGTGCCTGCGATGTGAAACTGTAACAGCTAGGGATGAAACATTTTTTGATTTGAGCCTTGACATTGAACAAAATAGTTCAATTACAAGCTGTTTGAAAAACTTCAGTTCAACGGAGACATTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAGCCACCTCACGTCTTGGTCATCCACCTTAAGCGGTTTAAATACATTGAACAGCTGGGACGCTACAAGAAGCTGTCTTACCGGGTAGTCTTCCCACTCGAGCTGAAATTAAGCGATACTGCTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTTCATGTTGGGAGTGGGCCCAACCACGGGCATTATGTCAGCCTTGTGAAAAGCCACAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAATCTGCTGTTCAGACATTCTTTGGTTCATCGCAAGAGTATTCCAGCAATACAGACCATGGTTACATTTTGTTCTACGAGAGCATTGGCTCTGGTAACAGGAACTAG 1110 0.4216 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNRSLADGEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKETQSAKNDHETSPPSEKTANGPKNGLANGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTAEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGNRN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01992 369 CDD Peptidase_C19G 24 361 - -
Spst1g01992 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Spst1g01992 369 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Spst1g01992 369 FunFam Ubiquitin carboxyl-terminal hydrolase 3 5 362 - -
Spst1g01992 369 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 24 363 - -
Spst1g01992 369 MobiDBLite consensus disorder prediction 132 159 - -
Spst1g01992 369 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Spst1g01992 369 SUPERFAMILY Cysteine proteinases 21 362 IPR038765 -
Spst1g01992 369 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Spst1g01992 369 Gene3D Cysteine proteinases 5 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01992 Spst-Chr1 28141348 28145487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01992 24 334 Miscellaneous Gene Families AT4G31670 26.646 3.67e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01992 K11842 - gmx:100787737 739.954