Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01975 ATGGCGATCCGATTTTGGTGTCCCAAATTGCATCATAGCCGTTTATTTAGTTTGAGAAAACACAGTTCGACACTTGATAAACCGCATGATTCCAAATTGAAAAAACACACGGATAATGAATCGTATCCGTTCGATCACGGGACAAACGATTCGTGGAGTATGTTATATATAGGCCTCCACCTCTACTCGATGGCCCGCACGAAGCAAACTGCTCGTAAGTCAACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCAACCAAGGCTGCACGTAAGTCTGCACCAACCACTGGTGGTGTGAAGAAGCCACATCGTTATCGTCCTGGTACTGTTGCTCTTCGTGAGATTAGGAAATACCAGAAGAGTACCGAGCTTCTGATCCGTAAACTCCCCTTCCAGAGGTTGGTTCGTGAAATTGCTCAGGACTTCAAGACTGATCTGCGTTTCCAGAGCCACGCCGTGCTTGCATTGCAAGAAGCGGCTGAGGCATATCTTGTTGGACTCTTTGAGGACACTAACCTGTGTGCCATTCATGCTAAGCGTGTAACTATTATGCCCAAGGACATCCAGCTGGCTAGAAGGATTCGTGGTGAGCGTGCTTGA 600 0.4783 MAIRFWCPKLHHSRLFSLRKHSSTLDKPHDSKLKKHTDNESYPFDHGTNDSWSMLYIGLHLYSMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01975 199 SUPERFAMILY Histone-fold 65 196 IPR009072 GO:0046982
Spst1g01975 199 ProSitePatterns Histone H3 signature 2. 130 138 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 PANTHER HISTONE H3 64 197 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 FunFam Histone H3 65 113 - -
Spst1g01975 199 FunFam Histone H3.3 116 199 - -
Spst1g01975 199 SMART h35 97 199 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 MobiDBLite consensus disorder prediction 69 104 - -
Spst1g01975 199 ProSitePatterns Histone H3 signature 1. 78 84 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 MobiDBLite consensus disorder prediction 21 41 - -
Spst1g01975 199 Pfam Core histone H2A/H2B/H3/H4 64 195 IPR007125 GO:0003677
Spst1g01975 199 PRINTS Histone H3 signature 66 80 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 PRINTS Histone H3 signature 80 94 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 PRINTS Histone H3 signature 97 118 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 PRINTS Histone H3 signature 177 198 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 PRINTS Histone H3 signature 161 177 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 PRINTS Histone H3 signature 121 138 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 PRINTS Histone H3 signature 143 161 IPR000164 GO:0000786|GO:0003677|GO:0030527
Spst1g01975 199 Gene3D Histone, subunit A 65 199 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01975 Spst-Chr1 27889420 27890874 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01975 K11253 - dcr:108205287 269.626