Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01966 ATGTTTGTTCACAAACCCTCATTCTTGATGGGACTTGTTTTCACCAAATGGGCATGTGTATTCTTACTCTGCTGTTGTCTCATAACTTCTGGGGTATATTCAGTGGAAGGGTTACATGGAGGTTCTAAAGTGAGAGGAGTGAACTTAGGAGGGTGGCTGGTTATCGAAGGTTGGATCAAGCCTTCACTGTTTGATGGCATTGCCAATGGAGACATGCTTGATGGGGCAGAGGTGCAATTTAAATCAGTGACATCGCTGAAGTATGTATCTGCTGAGAATGGGGGAGGAATGAATGTAACAGTTGACAGAGATGTCCCATCTTCATGGGAAACCTTCAGGTTATGGAGAGTATCTGAATCAGAATTTCAATTTCGTACCTCTGAAGGCCAATTTCTTACGTGTGATGGTGGAGGCCACTTTGTCTCTGCAACAGCAAAATCTCCTTCAACATCAGAGACATATGAAATTGAGCGGAGTGGAAAAAGTAGGATTCACCTCAAGATGAAGGGTGGGGCATACCTTCAGGCTACAACTGATGACCAGCTTACAGCGAACTACCCAGGTACACCAGGATGGGATGATAATGCTGCCACATTTGAAATGACAATTGTATCAAATAGTTTGCATGGAGATTACCAGCTAGCAAATGGATATGGGCATAATCGGGCAAAAGACGTTCTTAGGAGACATAGAAATAACTTTATCACGATAGAGGATTTCAAATTTCTATATAAACATGGAATAAATACTGTGAGGATACCAGTTGGGTGGTGGATTGCTTTTGATCCTGATCCTCCAGGTCCATATATCGGAGGAAGTCTTGAAGCTCTAGATAATGCATTTTTATGGGCACAAGAATATGATATAAAATGCATAATTGACCTTCATGCTGCTCCTGGTTCTCAAAATGGAATGGAGCATAGTGCAAGCCGAGATGGATTTACGGGCTGGCCAACTTCTGCAGATTACATTTCCGAGTCATTACATGTTATTGATTTTTTAGTTTCTAGATATGCAAAACATCCTTCCTTGCTGGGAATTGAGCTATTGAATGAACCATCTGCTGCCTCAGTTTCATTAGATGTTTTGATTCCATATTATAAACAGGGCTACCAAATTGTTCGCAAATACTCGTCATCAGCTTACGTGATAATCTGCCAGAGAATTGGCGTTGCAGATCCTATGGAACTTTATCAAGCCAACATAGGATCTCACAACTTAGTTTTGGATTTGCATTTCTACAATCTCTTTGACCCATTTTTTGTTAATATGAGTGCTGTGGATAATATTCAATACATATACAAAAGCCGGGAAGGTCAACTGCAGGCCTTAAACAATTCAAATGGCCCACTTGTTTTAGTTGGAGAGTGGGTGAATGAGTGGAACGTGACAAGCGGATCCCTAAAAGATTATCAGGACTTTGGAAGGGCACAGTTAGACGTCTATAATGCAGCTTCCTTTGGATGGTGTTATTGGACACTGAAAAATGACAGAGAACACTGGGATTTTGAATGGAACATTAGGAACAACTATCTTCAATTAGGTAACTCACCCAGCAAACGGAGCTTGAACATTCTAGGATTTTTAGGATTGGCATTCACCTGGTTTTGTCTACTTCAATTTTTGTGA 1629 0.4088 MFVHKPSFLMGLVFTKWACVFLLCCCLITSGVYSVEGLHGGSKVRGVNLGGWLVIEGWIKPSLFDGIANGDMLDGAEVQFKSVTSLKYVSAENGGGMNVTVDRDVPSSWETFRLWRVSESEFQFRTSEGQFLTCDGGGHFVSATAKSPSTSETYEIERSGKSRIHLKMKGGAYLQATTDDQLTANYPGTPGWDDNAATFEMTIVSNSLHGDYQLANGYGHNRAKDVLRRHRNNFITIEDFKFLYKHGINTVRIPVGWWIAFDPDPPGPYIGGSLEALDNAFLWAQEYDIKCIIDLHAAPGSQNGMEHSASRDGFTGWPTSADYISESLHVIDFLVSRYAKHPSLLGIELLNEPSAASVSLDVLIPYYKQGYQIVRKYSSSAYVIICQRIGVADPMELYQANIGSHNLVLDLHFYNLFDPFFVNMSAVDNIQYIYKSREGQLQALNNSNGPLVLVGEWVNEWNVTSGSLKDYQDFGRAQLDVYNAASFGWCYWTLKNDREHWDFEWNIRNNYLQLGNSPSKRSLNILGFLGLAFTWFCLLQFL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01966 542 SUPERFAMILY Actin-crosslinking proteins 78 198 IPR008999 -
Spst1g01966 542 PANTHER FASCIN 42 514 IPR010431 GO:0007015|GO:0051015
Spst1g01966 542 Gene3D - 91 189 - -
Spst1g01966 542 Pfam Cellulase (glycosyl hydrolase family 5) 233 497 IPR001547 GO:0004553|GO:0071704
Spst1g01966 542 ProSitePatterns Glycosyl hydrolases family 5 signature. 345 354 IPR018087 GO:0004553|GO:0005975
Spst1g01966 542 Gene3D Glycosidases 39 90 - -
Spst1g01966 542 Gene3D Glycosidases 195 522 - -
Spst1g01966 542 SUPERFAMILY (Trans)glycosidases 43 513 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01966 Spst-Chr1 27823300 27827628 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01966 - - gmx:100809472 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01966 1 27823300 27827628 Spst1g01966 1 27823300 27827628 ECH