Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01930 ATGGCAATGATTCCGTACCAACTTTCCCGATTACCTTACCACGATTCCCTCAAAGTACTTGAGGCTGATATACAGCACGCCAATGCTTTGGCTGCTGCAATTCCCAGAGCCAAGGGTGGCACTCTTCTTCAAATGAAATTGGTTTACAATCAATTGGCTCCTCTCTTCCTTTTATTTCTACAATGGATGGATTGTTCTTGTGCAGGCTTTCTCCATAGATATCTCAACCTCTTCCACATAATTATATACAAGGTACATAATGATGGTAGATCAAACATGTCTACTCATGGAAGGAAGGCTACCATTGGGGACTTTTATGCCGTTATATTGCCATCTCTCCAACGCCTTCATGGTAGTTTGGAGAAGTTGGAGGTTGTTGAAGAAGGGCAATCAAGCATAGAAAGTTCAAGTTATGGCAAGAAGGTGACTGAAGCAAGTGGGAGACTAACCAATGTTGATTTGCAAAGAGAAGATGAATGTGGGATTTGCTTAGAGCCTTGCACCAAAATGGTTTTACCTGGCTGTTGCCATGCCATGTGTATTAAATGCTACCGCAAGTGGAACAGAAAGTCAGAGTCTTGTCCTTTTTGTAGAGGTAGCTTGAGGAGAGTTAACTCAGAGGATCTATGGGTACTAACCTGTGATGATGATGTTGTTGACCCTGAAACAGTTTCTAAGGAGGACTTGTTGCGTTTTTACCTCTACATCAGCAAGCTGCCTAAAGATCACCCAGATGCTCTTTTCTTGATATCCAAATCTCGTTTAGGAGTGAGGAAATTGAATGTTGAGATGTCTGAGAATCACGTAGCGGAGCAGCTTTCGGAAGTGGATTCGGGTCGTGGTGTGGTTGTGGATACCGAATCAAACACTGGTACAAATCAAGATCAGGGAGAACCTGAAGATGAAAAGTCTACAGAGGATACTGCCAGGGATGACATGTTTGTTGATTGTCCCGATGAGTTAACTGGGCAAAAGGAGGAAGAACTTGCAACTGCTAGAAATGAAGATGTGGGATCGCAGGAAAATGAAGATATGCATCAGCAGCAGAGACATTTTGTTGAAATGGGCAATGGAATGGGGGATGCTCACTCCCCAGACCAGCTGGAGAAAGCTGATACTGAGAACGAACGGGTCTTGCAGGAATACCAGGATGAAAGACAAACTGTTGCACAGGGACTGCTTGATCTTCATCGGCAGCTAAAGACTCTCACTGGCAAAGTTAATGAAGGTGAAATCAGAGATAGGGAAGTGACTGATGTTCCTGTGAGGGAGATGATAAAAGAGTGTTTGGAGTTTGTGAGTACTGCTTCAGAAGAACGGTCAAACAGTGAAACCACTATAAGTAATCTTCGCGAACATCTGTCTAGCAGGGACCGTGAGATAGAGGATCTTAATGCAAAGGTTGCTCAGTTAGTGGTATCTAATAACAGTTTTCAGGTTTCCTCTGAAGCTCAACTTGGAAAGGATCGTAATGTAGAGATTTTGATAGATAAGACGATATCCTCTCTTGCAACAGTTGTTACTCAAGAACAAGTATTGGATGATTCTATTAGTGGGAAAATAGTTTATATCGAGGAAGGCACTATGCATTTAATTGGAATGTATAATCAGATTCTTTCCGATGTTTATCAACTCAGGCAATTTTTCTCCGAGGTAAGTGTGGATACTAAAGAGCAGGAATATGGAAACATACTTGCTGATGTTCATGGTGGGTTACTGGAGCTCAAAAGAAGGGAAACGGATTTGGTTGAAAAACTGGCTCAGTTAGAAGATGAAAACCGGAAAGTGGTTGATGAGCTTGATAAGGAAAAGGTGATGATAGGGGCATTAAATACTGAACTAGGAAATCTGAAAATAGAACTTGAGCAGGAAAAGGTTAAATGTGCTAATACAAAAGAAAAGCTTAGTATGGCTGTGACAAAAGGAAAGGCATTAGTACAGCAGCGAGATTCGTTAAAGAAGTCTCTGGCTGATAAATCCAGTGAGCTTGAGAAATGTTTGATTGAATTGCAAGAGAAGTCAGTTGCAATCCAAACTGCTGAACTTGCTAAGGAGGAGTTGGCCTATAGTGAAAATATGGTTGCATCCCTACAGAACTTGTTATTAGAAAAGAATGCAATTTTTGATCAAGTGCAAGAAATCTTGTGTGATGCCAAACCTGATGAACCTGGAATGTTTGATGTGCCAGAGAAACTCAGATGGCTTGTGGATGAGAGAAATACACTGAAGGAAGCCTTCATAGAGTTATGCAAGTTGAAGGAAGCTCTATCTCTAGTGGACCTACCAGAGCCTGTTTCATCATATGATATGGAATCACAAATGAATTGGCTTGTGGATTCTTTTCTTAGGGCCCGGGACCACATGGATACTCTACAGGAAGAAAATTCTGCTGTCCAGGAAGCATCACGTAACAATATTGATCAATTAAGTGTTTCTCTTTTGCTGGAATTGCAGGAAAAAGATTACCTTCTGTCAGAGTTAACAGATTTGAGGTTCAAATATGACAAACTTGTCGGCAAGAACTCTCAGATTTCTTTGGAGAAGGATCATATAGTCAATATGTTAGTTGATCTTTGTGGCCTGAACAAGGAAGATGAAGGGATTGACTCTTCCAACACTTCTGTGATCATTGACTTATGCTTTCAAATTATAAAAGGTCAGAGTGGTCCCTCTAGAGCATCTGTTATTGATGCTGAGTTGTTTGAAAAGATTCAAAGTCTCTTGTATGTTCGAGATCAGGGATTAATACTCTATGAAGATATACTGGAAGAGGAGATGCTAATTAGATCAGGTATGAATAAGCTTTCAAATGAATTGAAAGTGGCATGTGAGGAAATTGTAACACTGAAAGAAGAAAGGAGTTCTCTCCTGCAAGATCTTGATCGATCAGAGGAAAAGACTGCCATGCTTAGGGATAAATTGTCCATGGCAGTTAAGAAAGGAAAGGGGCTGGTTCAAGATAGGGACAATCTAAAAGGTCTTCTAAATGAAAGGAACTCAGAGATTGAGCAGTTGAAGGTTGGATTGCAGAAGCAAGAATCTGCTGTTTCTGAATACAGGGATGAGATCAACAGATTGTCCAGTGATGTGGAAAGCATCCCAAAGCTGGAGGCTGATCTTCTGGAAATGAAAAAGGAGAGGAATCAGTTAGAACATTTCTTAATGGAGAGCAATAACATGTTACAGAAAGTGATGGAGTGTATTGATGGCATCACTCTTCTAGTTGTTGAGCCCGTTTTTGATGAACCAATAGAAAAGGTGAAGTGGCTTGCTGGTTATGTCAGTGAATGCCAAGATGCTAAGGTACACTTAGAAAAAGAGTTGCAGCTAGTGAAGGAGAAAGCCAGTATACTTGAAATTAAAGTAGCTGAATTCCAAGCCACTGTAAAATCCCTTGAACAGGAATTATCATCTTCAGATGACAGTCTTTCTCAACTTGCTGAAGAAAAAACAGAATTAGAACGTGGGAAGGCAAAAATTGAGGAAGAGTTACAGAAAGTTAAAGAAAAAGTTGCTGAAGGTTGTAGTACTAATAAGTCACTTGAAGATGCCTTATCAGAAGCAGAAAAAGAAATTTCTATTCTTTCCGAAGAGAAAGAGCAGGCTCAAGTTAGCAGAGTTGCTGCAGAGAGAGAGTTAGAGACTCTTAAAGATGAAGCAGTCAGTCAAACAAGCAAACTGGTAGAGGCCAGCAGGAACATAAAGGATCTAGAAGATAAACTGTATCAGGTTGAGGATACTAATAAGATACTTGAAGATGCGTTATCACAAGCAGACAAAGATATTTCTATTCTTTCCGAAGAGAAAGAGCAGGCTCAAGTTAGCAGAGTAGCTGCAGAGAGAGTTTTAGAGAGTTTTAAAGATGAAGCAGCCAGTCGAACAAGCAAACTGGAAGAGGCCAGCAGGACCATAAAGGATCTAGAAGATAAACTATCTCAGGTTGAGGGTAATGTCAATTTATTGACTGAAAAGTATAATGCTGATCAAGTTGTCAAGATTGACATGGAAAATGAATTGAAGAAGCTGCAAGATGAAGCTGGAAATTATGCTAACAAATTGGTAGGTGCCTCTGAAACTATAAAATCACTGGAGGATGCATTATCGAAGGCACAGGATGATATTTCTGCCTTAGAATATTCAAATAAAATTGCGAAGCAGGAGATATCTTCACTTGATTTGAAGTTAAATTCATGCATGGACGAGTTAGCTGGAAAGAATGAAAGCTTAGAAAACAGGTCCTTACAGCTCATTGGACTCCTTAATGATCTTCAAGTGCTCATGAAAGACACGACTCTATTTACCAGAATAAAACAATGCTTTGAGGCGAAATGTGAGACCATGAGGAATATGAATCTCATTCTCAACAAAATAAGAGATAATGTTGCCTTGACTGCAAAGGACTCCAAGGGACAGCTAGTGATGGAGGAAAATCCACTAATGCAAAAAACATTATTGGATGGCCCTGAAAATTTTAAAGTTGAACTGGACAATACAGAGATTGATGGTGCTGATATTGACAGCATAATCTCATCATTTGGAAAGATTGTGAAAGCATTTCAGTTGAGCAACAAACACATTGCAGATAAGTTTGATGAATTTTCAGATTGTATGGATGAGTTTATTTCTCCTCTCCATGAGAAACTATTGGAAACAGAGACCATCTCATTGACTATTGTTCAGAAAATGGAAATTATGAAAGAAGAAGCAAATACCATGGAAAGGTTGAAAGAAGAACAGGAAAATATTATTGCCACTTTAGAAAACAATGTCAGTGTGTTGCTATCTGCATGCACTGATTCTACCGTTGCACTTCAGAGTGAAGTTGACAAGAATCTTGGGCAGCCAGATTCCATTTTTGAGGTTGAAAAGTTAAACCTTGAAGCAGGTGCACAAGCAGAACATCATAGGAACAGTAAATATGTGGAGGCCACACATAAGTTGATTAATGCTTCTAGAAAAGCTCAAACTTTGATTAGACAGTTTGAATGTAGAAGTAAGCAGTTAGATGCAACAATTGAAGATTTACAGAATAAATTGAAAGAAACAACAGTTGCTTTTGAATTAGTCGCAGATGAGAGAGACTCATATAAAAACATAGTTTCACGACTGGAATCTGATATTCAATCACTGCAAAGTGCTTGCAGTGAGCTTAAGGATAAGTTGGAGAGTTTTCATGCCCAAGAAGAAAAATTGGAGGAAAAAGAGGCTGAGATTTCATCGATGCACAATGCTTTGTTGGCAAAAGAAGAAAACTCCCTCCTTACATCATCTCAAATGAGAGAGCTCTTTGACAAGATAGATATGACCAAAATCCCTATTGTAGAGGCTGAAGAAGATGACTTGGAGCTACAGACTTCAGCCCCTATGAAAAAACTCCTCTACATAATTGATAGTGTTACTAGGTTGCATAATCAATTAAACTCTCTGTCTCATGATAAAGAAAATCTGCAGTCAATTCTTGAAACGAAGGATCTTGAAATTAAGGATATGAAGGAGGAAGTTAAACAGCTCAATAGAAACTGCGAAGATGCAAAAATCATTAAGAATGAATTGTCTGAGCTCACCTATGTATTAGAAAAAATTATGAATATTTCGGGAGCCGATGAATGGGCTGTAGATAGGAAATCTAAAGGTTTGAAGGAATTAATTCCAGCACTGGAAAAACATATAATTGCCATTCTTTCAGAATCTGATAATTCAAAATCCAAGGCCCAAGAACTTGATATTAAGTTAGTTGGAAGTCAAAAGGTTATTGATGAATTAACAACCAAGGTTAAATTACTTGAAGATTCACTCCAGGATAGGAGGACTTCTCAGCCAGACATTGTCCTGGACAGGAGCATATATGAAGCATCCTCATTACCTACTGGGACCGAGATAACTGAAGTTGAAGAGGGTCCATCACGTGGCAAGAACGCAACATCTCCTGTGCCATCAGCTGCTCACGTGCGGAATATGCGAAAAGGATCTACTGACCATCTTGCACTTGATATTAGTTTGGAGTCTGATAGTTTGATTAACAAGGCGGACACGGATGAGGATAAAGGTCATGTATTCAAGTCTCTGAACACTACTGGATTTGTACCAAAACAGGGAAAGCTCATTGCAGATCGTATTGATGGACTCTGGGTATCTGGGGGTCGAGTTCTCATGAGTCGTCCTAGAGCAAGATTAGGACTTATTGGTTATTGGCTTATCTTGCATATATGGCTGCTGGGGACGATCTTGTAG 6231 0.3961 MAMIPYQLSRLPYHDSLKVLEADIQHANALAAAIPRAKGGTLLQMKLVYNQLAPLFLLFLQWMDCSCAGFLHRYLNLFHIIIYKVHNDGRSNMSTHGRKATIGDFYAVILPSLQRLHGSLEKLEVVEEGQSSIESSSYGKKVTEASGRLTNVDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDDDVVDPETVSKEDLLRFYLYISKLPKDHPDALFLISKSRLGVRKLNVEMSENHVAEQLSEVDSGRGVVVDTESNTGTNQDQGEPEDEKSTEDTARDDMFVDCPDELTGQKEEELATARNEDVGSQENEDMHQQQRHFVEMGNGMGDAHSPDQLEKADTENERVLQEYQDERQTVAQGLLDLHRQLKTLTGKVNEGEIRDREVTDVPVREMIKECLEFVSTASEERSNSETTISNLREHLSSRDREIEDLNAKVAQLVVSNNSFQVSSEAQLGKDRNVEILIDKTISSLATVVTQEQVLDDSISGKIVYIEEGTMHLIGMYNQILSDVYQLRQFFSEVSVDTKEQEYGNILADVHGGLLELKRRETDLVEKLAQLEDENRKVVDELDKEKVMIGALNTELGNLKIELEQEKVKCANTKEKLSMAVTKGKALVQQRDSLKKSLADKSSELEKCLIELQEKSVAIQTAELAKEELAYSENMVASLQNLLLEKNAIFDQVQEILCDAKPDEPGMFDVPEKLRWLVDERNTLKEAFIELCKLKEALSLVDLPEPVSSYDMESQMNWLVDSFLRARDHMDTLQEENSAVQEASRNNIDQLSVSLLLELQEKDYLLSELTDLRFKYDKLVGKNSQISLEKDHIVNMLVDLCGLNKEDEGIDSSNTSVIIDLCFQIIKGQSGPSRASVIDAELFEKIQSLLYVRDQGLILYEDILEEEMLIRSGMNKLSNELKVACEEIVTLKEERSSLLQDLDRSEEKTAMLRDKLSMAVKKGKGLVQDRDNLKGLLNERNSEIEQLKVGLQKQESAVSEYRDEINRLSSDVESIPKLEADLLEMKKERNQLEHFLMESNNMLQKVMECIDGITLLVVEPVFDEPIEKVKWLAGYVSECQDAKVHLEKELQLVKEKASILEIKVAEFQATVKSLEQELSSSDDSLSQLAEEKTELERGKAKIEEELQKVKEKVAEGCSTNKSLEDALSEAEKEISILSEEKEQAQVSRVAAERELETLKDEAVSQTSKLVEASRNIKDLEDKLYQVEDTNKILEDALSQADKDISILSEEKEQAQVSRVAAERVLESFKDEAASRTSKLEEASRTIKDLEDKLSQVEGNVNLLTEKYNADQVVKIDMENELKKLQDEAGNYANKLVGASETIKSLEDALSKAQDDISALEYSNKIAKQEISSLDLKLNSCMDELAGKNESLENRSLQLIGLLNDLQVLMKDTTLFTRIKQCFEAKCETMRNMNLILNKIRDNVALTAKDSKGQLVMEENPLMQKTLLDGPENFKVELDNTEIDGADIDSIISSFGKIVKAFQLSNKHIADKFDEFSDCMDEFISPLHEKLLETETISLTIVQKMEIMKEEANTMERLKEEQENIIATLENNVSVLLSACTDSTVALQSEVDKNLGQPDSIFEVEKLNLEAGAQAEHHRNSKYVEATHKLINASRKAQTLIRQFECRSKQLDATIEDLQNKLKETTVAFELVADERDSYKNIVSRLESDIQSLQSACSELKDKLESFHAQEEKLEEKEAEISSMHNALLAKEENSLLTSSQMRELFDKIDMTKIPIVEAEEDDLELQTSAPMKKLLYIIDSVTRLHNQLNSLSHDKENLQSILETKDLEIKDMKEEVKQLNRNCEDAKIIKNELSELTYVLEKIMNISGADEWAVDRKSKGLKELIPALEKHIIAILSESDNSKSKAQELDIKLVGSQKVIDELTTKVKLLEDSLQDRRTSQPDIVLDRSIYEASSLPTGTEITEVEEGPSRGKNATSPVPSAAHVRNMRKGSTDHLALDISLESDSLINKADTDEDKGHVFKSLNTTGFVPKQGKLIADRIDGLWVSGGRVLMSRPRARLGLIGYWLILHIWLLGTIL 2076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01930 2076 Coils Coil 447 467 - -
Spst1g01930 2076 Coils Coil 572 634 - -
Spst1g01930 2076 Coils Coil 1813 1854 - -
Spst1g01930 2076 SMART ring_2 160 197 IPR001841 -
Spst1g01930 2076 Coils Coil 1178 1387 - -
Spst1g01930 2076 Coils Coil 1558 1596 - -
Spst1g01930 2076 PANTHER CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED 1249 2060 - -
Spst1g01930 2076 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
Spst1g01930 2076 Coils Coil 653 673 - -
Spst1g01930 2076 Pfam Ring finger domain 158 198 IPR001841 -
Spst1g01930 2076 MobiDBLite consensus disorder prediction 326 346 - -
Spst1g01930 2076 Coils Coil 1094 1173 - -
Spst1g01930 2076 Coils Coil 1002 1029 - -
Spst1g01930 2076 Coils Coil 1658 1751 - -
Spst1g01930 2076 Coils Coil 784 804 - -
Spst1g01930 2076 SUPERFAMILY Tropomyosin 1165 1421 - -
Spst1g01930 2076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 208 IPR013083 -
Spst1g01930 2076 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
Spst1g01930 2076 MobiDBLite consensus disorder prediction 272 313 - -
Spst1g01930 2076 Coils Coil 368 388 - -
Spst1g01930 2076 MobiDBLite consensus disorder prediction 296 313 - -
Spst1g01930 2076 SUPERFAMILY RING/U-box 151 202 - -
Spst1g01930 2076 Coils Coil 932 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01930 Spst-Chr1 27551573 27563003 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01930 - - gmx:100800411 2627.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01930 1 27551573 27563003 Spst1g01930 1 27551573 27563003 ECH