Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01923 ATGTTCAATAAGATATTCAGTAAACTCCCTCGAAAGTCATCGAAAGGTTCCGAACACGGTGGAAGTGGAAAAAGCCATCATGGGGTTACCAGTTCTTCGAAGAACAGTGATTCTGTTAGTGTTACTCCAGTTGGCACCAGACCCGGGAATTCTTCCTCTGCAGGACAGAATCATGGTAACAGAGTTCCATTACCGAAGGTTGTGAATGAGAACAATATTCACAACAACCCCAGTAACGGGAATTTTGGTTCCTATGAGGCATTGCCTACATTCAGAGATGTTCCCTCTTCTGAGAAGCCTACTTTGTTTGTCAAGAAGCTTAGAATGTGTTGTGTGGTGTTTGACTTCACAGACCCTACCAAACACCTCAAGGAGAAGGAGATTAAGAGACAGTCCTTGGTGGAACTCTTGGATTATGTGACTTCTGCTAATGCTAAGTTCGCCGAGAATGTGATGCAGGAGGTTGTGAAAATGGTGTCTACAAACATATTCAGGACACTCAGTCCTCAGCCACGCGAGAATAAGATTGTTGATGGTGTTGATGTGGAGGAGGAGGAGCCTTCAATGGATCCTGCTTGGCCTCATTTGCAGATTGTCTATGAGCTTTTTCTGCGGTTTGTGGCATCACCTGAACTGGATGCGAAGTTGGCGAAGAGATACATTGATCAGTCCTTCATTTTGAAGCTGCTGGATTTGTTTGACTCTGAGGATCCGAGGGAGCGCGAGTATTTGAAGATGACTCTGCACCGTATCTATGGCAAATTCATGGCACATCGCCCTTTCATCCGGAAGGCCATCAACAATGTGTTCTTTAATTTTATTTTTGAGACTGAGAAGCATAATGGGATTGCTGAGTTCTTGGAAATTCTTGGGAGCATCATCAATGGTTTTGCACTGCCATTGAAGGAAGAGCATAAACTGTTTCTTGTTCGCATACTGATTCCTCTGCACAAGCCAAAGTGCTTGGCAATGTATCATCAACAATTGTCTTATTGCATTACTCAATTTGTGGAGAAAGACTGCAAACTTGCTGATACAATTATCAGGGGGCTATTGAAGTACTGGCCCATAACAAATAGTTCAAAGGAAGTTATGTTCCTGGGTGAGTTAGAAGAAGTCTTGGAAGCAACTCAACCCCCAGAATTCCAGCGTTGTATGGTGCCATTATTTCGTCGTATTGCCCGCTGTTTGAATAGCCCTCATTTTCAGGTGGCAGAAAGAGCTTTGTTCTTGTGGAACAACGATCACATCATGAACTTGATCAAGCAAAACAGAAAAGTGATACTGCCCATCATCTTCCCTGCATTGGAAAGAAATGCTAGAAGTCATTGGAACCAAGCTGTTCATAGTTTGACCTTAAATGTGCGGAAGATTTTTAATGATGTCGATGCTGATCTATCCAAAGAATGTTTACAAAAGTTTGAGGAAGATGAGTCAAAGGAAAATGAAGTCAAAGCAGGGCGTGAAGCCATGTGGAAACGTTTAGAGGAGCTTGCCGCGAAGAAAGCTGCAAGTGGAGAAGCAGTGCTTATTGGTAAAGCACCAACTCGCACCCCTGCAGGTTAG 1566 0.4349 MFNKIFSKLPRKSSKGSEHGGSGKSHHGVTSSSKNSDSVSVTPVGTRPGNSSSAGQNHGNRVPLPKVVNENNIHNNPSNGNFGSYEALPTFRDVPSSEKPTLFVKKLRMCCVVFDFTDPTKHLKEKEIKRQSLVELLDYVTSANAKFAENVMQEVVKMVSTNIFRTLSPQPRENKIVDGVDVEEEEPSMDPAWPHLQIVYELFLRFVASPELDAKLAKRYIDQSFILKLLDLFDSEDPREREYLKMTLHRIYGKFMAHRPFIRKAINNVFFNFIFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVPLFRRIARCLNSPHFQVAERALFLWNNDHIMNLIKQNRKVILPIIFPALERNARSHWNQAVHSLTLNVRKIFNDVDADLSKECLQKFEEDESKENEVKAGREAMWKRLEELAAKKAASGEAVLIGKAPTRTPAG 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01923 521 MobiDBLite consensus disorder prediction 69 84 - -
Spst1g01923 521 MobiDBLite consensus disorder prediction 1 84 - -
Spst1g01923 521 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 504 IPR002554 GO:0000159|GO:0007165|GO:0019888
Spst1g01923 521 SUPERFAMILY ARM repeat 101 481 IPR016024 -
Spst1g01923 521 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 88 499 IPR002554 GO:0000159|GO:0007165|GO:0019888
Spst1g01923 521 MobiDBLite consensus disorder prediction 24 59 - -
Spst1g01923 521 Gene3D - 95 498 IPR011989 -
Spst1g01923 521 PIRSF PP2A_B56 2 517 IPR002554 GO:0000159|GO:0007165|GO:0019888
Spst1g01923 521 FunFam Serine/threonine protein phosphatase 2A regulatory subunit 95 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01923 Spst-Chr1 27509847 27514368 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01923 K11584 - gmx:100811438 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01923 1 27509847 27514368 Spst1g01923 1 27509847 27514368 ECH