Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01922 ATGACGGAAAGTGAAGGAAAGCGTGAGAAAATGCGCAAAGAGAACAAGCGAGGAAGCCTCCTCGTTTTCACCGGAGCTGCTGCCGTGCTCGCGATTGCGGCGAATCTCGCCATCACCGCATTCAGGCACCACAAGGAAAAAAATGCAAAGAAGAAAGATCTTGCAGGTTCTAAGGTGCGCGTTAACCTACCTGCGCCTGAGATTCTTAAGTTAGCAGAACAAATCATTGCCAACTCGAAGAAGGTCCATAATTCTGTTGCGTCGGTGCCTCTCGACAAGGTTACATATGCAAATGTTATATCACCTCTGGCAGAACTGCAGGCGCAGCAATTTCCACTGGTCCAGTCTTGTGTGTTTCCGAAGATGGTATCTACTCGGGAGGATGTACGCAAAGCAAGTGCAGAAGCAGAGCGAAGAATAGATGATCATCTTGATGCGTGCAGGGGAATAAAGGATGGATTTGACTATGATGAAGTCTTGCCTAATCTCACTGGTTTCAGATGGATCAGCAAACGTGAAGATGTATATCTTGTCATTAAAGCATTTGCAGTTAGGGGGGAGTGGACGAATGCTGAAGCCAAACGCTTTGTTCAAACACTGGTGAGAGACTATGAGCGAAATGGATTGAACCTCACTGCAAGCAAAAGAGAAGAGTTGCAGCGTGTAAGGGCTCAGATTGATGAATTAAGCATCAAATATATCCAAAATCTCAATGACGATACCAAGTTTTTTCTCTTCAATGAGTCAGAGTTAGCTGGATTACCGCTGGAGTTTCTCAAGGCTTTAGACCAATCGGAAAATGGAAAATTTAAAATTTCCCTGAGAAGTCATCATGTTGCAGCTATACTTGAATTTTGCAAGGTTGGAACTACAAGGCAAGTGGTATCAGGGGCATATGGAAATCGGTGTGGAGAAATCAACATTTCTATCTTAGAAAGCCTGGTGCAACAGCGCCATAAATATGCTCGTTTACTTGGATTTTCATGCTATGCAGAGTATGCCATCGATGTTAGAATGGCAAAGACACCAAAAAAGGTGTTTGAATTCCTGAAAGACATATCAACAGGTTTAACTGACTTGGCCATGAAAGAACTTAATATCTTGAAAGATTTGAAGAAGAAAGAGGAAGGGGATTTTCCATTTGGAATTGTGGACCTACTATATTATGTAAAGCGGATTGAAGAACAGAGCTACGATTTGGACTTTGAAGAGATCAAGCAATACTTTCCAATTAGTGTGGTTCTATCGGGGATCTTCAAAATTGTCCAAGATCTATTTGGCTTAAGGTTTGAGGAAATTTCAGGAGCTGACGTTTGGCATTGTGATGTTCGTGTTTTCTCAGTGCTGGACTTGGGTTCTAGCAAACTCTTAGGTTATTGCTACCTTGATTTGTTCTCCAGGGAAGGAAAATATGGCCATACTTGTGTGTTAGCTCTCCAGAACAGTGCATTAACAATCAGTGGGGCACAACAGATACCAGTTGCATTGCTAATATCTCAATGTCAAAAAGAAGCTGATGCTAGTTCTGGATTATTGCGGTTTTCTGAAGTGGTCAGTCTTTTCCATGAGTTTGGCCACGTGGTTCAACAAATTTGCAACCGTGCATCGTTTACCAGAATTTCTGGATTATGTGTTGATCCGGACTTTGTGGAAATACCTTCTCAACTGTTAGAAAACTGGTGTTATGAACGTTATTCTCTCAAGTTGATTTCGGGATTTCATCAGGATATTACAAAACCGTTGACGGATGACATATGCAAATCAATTAAAAGATGGAGGACTTCGTTTTCTGCACTTAAATTGAAGCAAGATATACTCTGCTGTCTTTTTGACCAAATCATACATTCTGCGGATAACATAGACATTCAGGAATTATTCAAGCATCTTCATCCCATGGAGTTGTTAGGCTTGCCAATTTTAGAAGGAACCAATCCAGCATCATATTTTCCTTCTTCTGTCATTGGTTATGAGGCAGCGTGCTATAGTCGAATATGGAGCGAGGTTTTTGCTGCTGATATATTCACCTCAAAGTTCTGCAACGATGTTTCAAACCAGCATGCCGGCCTGCAATTCAGGAACAAGGTTTTGGCGATGGCCGGAGTGAAAGATCCTATCGATGTGTTATCAGACTTTCTAGGAAGAGAACCATCAATCCAAGCTTACATTGATAACAAAGTCAAAAAGTTTTTATTGGTTATTCAGGAACGCACACTTAAACCTAACTCTGGTGTCGTGTTTGAACGCGTTTTTGATTCCCAGGTCAACAAACAACCACCACCACCAAGACACCAAAACCGTGTTTGCTTCGTGTTAGAAGAAAAAGAGTAA 2328 0.4167 MTESEGKREKMRKENKRGSLLVFTGAAAVLAIAANLAITAFRHHKEKNAKKKDLAGSKVRVNLPAPEILKLAEQIIANSKKVHNSVASVPLDKVTYANVISPLAELQAQQFPLVQSCVFPKMVSTREDVRKASAEAERRIDDHLDACRGIKDGFDYDEVLPNLTGFRWISKREDVYLVIKAFAVRGEWTNAEAKRFVQTLVRDYERNGLNLTASKREELQRVRAQIDELSIKYIQNLNDDTKFFLFNESELAGLPLEFLKALDQSENGKFKISLRSHHVAAILEFCKVGTTRQVVSGAYGNRCGEINISILESLVQQRHKYARLLGFSCYAEYAIDVRMAKTPKKVFEFLKDISTGLTDLAMKELNILKDLKKKEEGDFPFGIVDLLYYVKRIEEQSYDLDFEEIKQYFPISVVLSGIFKIVQDLFGLRFEEISGADVWHCDVRVFSVLDLGSSKLLGYCYLDLFSREGKYGHTCVLALQNSALTISGAQQIPVALLISQCQKEADASSGLLRFSEVVSLFHEFGHVVQQICNRASFTRISGLCVDPDFVEIPSQLLENWCYERYSLKLISGFHQDITKPLTDDICKSIKRWRTSFSALKLKQDILCCLFDQIIHSADNIDIQELFKHLHPMELLGLPILEGTNPASYFPSSVIGYEAACYSRIWSEVFAADIFTSKFCNDVSNQHAGLQFRNKVLAMAGVKDPIDVLSDFLGREPSIQAYIDNKVKKFLLVIQERTLKPNSGVVFERVFDSQVNKQPPPPRHQNRVCFVLEEKE 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01922 775 PANTHER PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 35 725 IPR045090 GO:0004222|GO:0006508
Spst1g01922 775 Pfam Peptidase family M3 286 723 IPR001567 GO:0004222|GO:0006508
Spst1g01922 775 FunFam Probable thimet oligopeptidase 410 560 - -
Spst1g01922 775 Coils Coil 212 232 - -
Spst1g01922 775 CDD M3A_TOP 69 723 - -
Spst1g01922 775 Gene3D Collagenase (Catalytic Domain) 410 560 IPR024079 GO:0008237
Spst1g01922 775 Coils Coil 126 146 - -
Spst1g01922 775 Gene3D Endopeptidase. Chain P; domain 1 39 152 IPR024080 -
Spst1g01922 775 Gene3D Neurolysin, domain 3 216 722 IPR024077 -
Spst1g01922 775 FunFam Thimet oligopeptidase 1 43 158 - -
Spst1g01922 775 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 67 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01922 Spst-Chr1 27492754 27509818 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01922 K01392 - gmx:100793518 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01922 1 27492754 27509818 Spst1g01922 1 27492754 27509818 ECH