Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01901 ATGCCTGATTTAACTGTTGGAAAGAAGAGATTTATCCATCCAAATATGTGTTTCACCAATTTGATCAATCGAGATAAATCAACTCTTTCGGAAAGTGATAATTGTTTTTTCCCTGAGGCACTGAGTAAAGATTATAGCCCAATTCTACCTGGGCTACCTGATGATGTGTCTGAGTATTGTCTCGCACTTGTGCCTCGTTCCAACTTCCCTGCTATGGGTGGTGTATGTAAGAGATGGAGGTCGTTTATTCGAAGCAAAGAATTCGCTACTGTGCGAAAATTGGCTGGGATGCTCGAGGAATGGCTCTATTTCTTAACAACGGACTGTGAAGAAAAGGAAAGTCATTGGGAGGTTATGGATTGTCTCGGTCGTAAATGCCGATCTATTCCACCAATGCCTGGTCCAGTAAAGGCTGGGTTTGGAGTGGTGGTTCTTGATGGAAAACTTTTTGTTATGGCTGGTTATTCAGCTATTGAAGGAACTGCCTTTGCCTCAGCTGAGGTTTACCAATATGATTCTTGCCTCAACAGCTGGAGCAGATTGTTGAACATGAATGTGGCTCGTTATGACTTTGCTTGTGCTGAAGTCAATGGCCTGGTTTATGCTGTTGGAGGCTATGGGGAGAATGGTGACAGTTTGTCCAGTGCTGAGGTGTATGATCCAGATACTGACAAGTGGACGCTGATAGAGAGCCTCCGCCGTCCGAGATGGGGTTGTTTTGCTTGTGGATTTGAGGGTAAGCTCTATGTCATGGGTGGAAGGTCAAGCTTCACTATTGGAAACTCCAAGTTTGTTGATATATACAACCCTGAGAGGCACAGCTGGTGTGAGATTAAGAATGGCTGTGTTATGGTCACAGCTCATGCAGTATTAGGAAAGAAGTTGTTCTGCATTGAGTGGAAGAACCAGCGGAAGCTGGCTATCTTCAGTCCAGAGGACAATTCGTGGGAAATGGTAGCAGTTCCATTGACAGGGAGTACAAGTGTTGGTTTTCGGTTTGGGATACTGGATGGAAAGTTGCTGCTATTCCCTCTGGTGGCAGAACATGCTTATCAAACATTGTTGTATGATCCAAATGCAGCTCTGGGGTCAGAGTGGCAGACTTGTGACATAAGGCCATCTGGTATGTGCTTGTATTGTGTAACAATCAAGGCGTGA 1158 0.4482 MPDLTVGKKRFIHPNMCFTNLINRDKSTLSESDNCFFPEALSKDYSPILPGLPDDVSEYCLALVPRSNFPAMGGVCKRWRSFIRSKEFATVRKLAGMLEEWLYFLTTDCEEKESHWEVMDCLGRKCRSIPPMPGPVKAGFGVVVLDGKLFVMAGYSAIEGTAFASAEVYQYDSCLNSWSRLLNMNVARYDFACAEVNGLVYAVGGYGENGDSLSSAEVYDPDTDKWTLIESLRRPRWGCFACGFEGKLYVMGGRSSFTIGNSKFVDIYNPERHSWCEIKNGCVMVTAHAVLGKKLFCIEWKNQRKLAIFSPEDNSWEMVAVPLTGSTSVGFRFGILDGKLLLFPLVAEHAYQTLLYDPNAALGSEWQTCDIRPSGMCLYCVTIKA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01901 385 SUPERFAMILY F-box domain 47 89 IPR036047 GO:0005515
Spst1g01901 385 Pfam Kelch motif 187 232 IPR006652 GO:0005515
Spst1g01901 385 Pfam Kelch motif 138 184 IPR006652 GO:0005515
Spst1g01901 385 SMART fbox_2 52 92 IPR001810 GO:0005515
Spst1g01901 385 Pfam F-box domain 51 88 IPR001810 GO:0005515
Spst1g01901 385 SMART kelc_smart 148 198 IPR006652 GO:0005515
Spst1g01901 385 SMART kelc_smart 247 293 IPR006652 GO:0005515
Spst1g01901 385 SMART kelc_smart 199 246 IPR006652 GO:0005515
Spst1g01901 385 Gene3D - 86 381 IPR015915 GO:0005515
Spst1g01901 385 PANTHER OS02G0202900 PROTEIN 8 376 IPR045887 -
Spst1g01901 385 SUPERFAMILY Kelch motif 99 343 IPR015915 GO:0005515
Spst1g01901 385 CDD F-box_AtAFR-like 48 92 - -
Spst1g01901 385 Pfam Kelch motif 236 279 IPR011498 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01901 Spst-Chr1 27247906 27249256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01901 52 230 Miscellaneous Gene Families AT4G33900 28.718 5.29e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01901 - - gmx:100802912 738.028