Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01899 ATGTCGTTGGCATCATCATTCTCGATACTCCGGCACCGAGCGGCGGCTTCCGCCGCTCCACTGCTCCTGCGCCGTTTCCGGTCCCTCCCAATTGCCGCCCGGCAGCAGCCAAACCCTAACAGACAAGCCGCCCCAAGTCGCAACCTTCTGAAGGCGAAAAAATCGTTGAAGGAGTTTTCCTCTCTCGCCCCTGTCCTCTCCCTGGAAGACAGCCCTCCTCTCACGGAATCTCAGGCCATCGGCGTCGTGGCGGCGTCGCAGGCTAACTTCATGCGCGTCATCGTTCCCAAAAACGACGAACCTCCTTCTTCTGGAACCTTCCGCGGGGTGGAGCTTCTCTGCGTGGTGAGGGCGCTCTTAAAGAAGATTAAGCGTAGGGTCATGGTCGGGGACAAGGTTCTCGTCGGTTCCGTCGATTGGGTGGATCGCAGGGGATGGATTGAGAACGTGTTTCAGCGATCCTCTGAGATTCTCGACCCTCCCGTTGCCAACGTCGACCACCTTCTCGTGCTGTTCTCGCTCGAACAACCCAGGCCCGAACCGTTCACTCTCACGCGCTTTCTTGTCGAAGCTGAATCCACTGGAATCCCTCTCACGCTGGCACTCAACAAGACCGAGCTTGTGGATAAAGAGATCATTAGTTCGTGGAAGGCCAGGCTGCGCAGCTGGGGGTATGAGCCGGTTTTTTGCAGCGTTGAATCTGGACATGGACTTGATCTTCTTGCATTCAAGTTGAGGGATCAAACAACAGTGATTGTTGGGCCTAGTGGAGTGGGAAAGTCCAGTTTGATAAATGCCCTTAGAAGCAATCCTTATGATGTGACGGAAGGTGGAAATTGGTTTGAGCCTATTTCGGGAAGCAAGTGGCTTGAGGATCAACGAGTTGGGGAGGTTTCAATGAGAAGTGGCAGAGGAAAGCATACTACTCGCCATGTCTCTTTGCTTCCATTATCTGGAGGGGGTTTTCTTGCTGATACTCCTGGATTTAACCAACCTAGTTTATTGAAAGTGACAAAGCAGTCACTTGCGCAGACTTTTCCTGAAATCAGGAAAATGCTTTGTGCGAATGAGTCTGAGAAATGTTCATTTAACAATTGCTTGCATATGGGAGAACCTGGGTGCATTGTGAAGGGAGACTGGGAAAGGTATTCGTTCTATTTTCAACTCCTGGATGAAATCAGAATCAGGGAGGAGTTCCAACTTAGAACATTTGGAACTAAAAGAGAAGGGGATGTAAGGTTGAAAATGGGAGATATGGGTGTTCAGCAAGCAGAACCACGGTTGGAACCTAAAAAGCATAGGAGACAATCTCGGAAGAGGATTAACCAATCAATTTTAGATGATTTAGATGATGAAGACGACGACAATTTGCTTGATGAGGAAAATGATCCCATTTTAAGGGCGCTACGGAATAAAAACTCTTAG 1425 0.4982 MSLASSFSILRHRAAASAAPLLLRRFRSLPIAARQQPNPNRQAAPSRNLLKAKKSLKEFSSLAPVLSLEDSPPLTESQAIGVVAASQANFMRVIVPKNDEPPSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSVDWVDRRGWIENVFQRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKTELVDKEIISSWKARLRSWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINALRSNPYDVTEGGNWFEPISGSKWLEDQRVGEVSMRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLCANESEKCSFNNCLHMGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDDLDDEDDDNLLDEENDPILRALRNKNS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01899 474 Gene3D - 74 150 IPR012340 -
Spst1g01899 474 SUPERFAMILY Nucleic acid-binding proteins 79 153 IPR012340 -
Spst1g01899 474 Gene3D Probable gtpase engc; domain 3 336 398 - -
Spst1g01899 474 NCBIfam ribosome small subunit-dependent GTPase A 127 270 IPR004881 GO:0003924|GO:0005525
Spst1g01899 474 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 51 456 IPR004881 GO:0003924|GO:0005525
Spst1g01899 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 393 IPR027417 -
Spst1g01899 474 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 332 IPR030378 GO:0005525
Spst1g01899 474 Gene3D - 151 334 IPR027417 -
Spst1g01899 474 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 79 397 IPR004881 GO:0003924|GO:0005525
Spst1g01899 474 Pfam RsgA GTPase 150 334 IPR010914 GO:0003924|GO:0005525
Spst1g01899 474 MobiDBLite consensus disorder prediction 414 460 - -
Spst1g01899 474 CDD YjeQ_EngC 163 391 IPR004881 GO:0003924|GO:0005525
Spst1g01899 474 ProSiteProfiles EngC GTPase domain profile. 163 330 IPR010914 GO:0003924|GO:0005525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01899 K06949 - gmx:100796145 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01899 1 27146828 27149642 Spst1g01899 1 27146828 27149642 ECH