Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01888 ATGTCTGCAGACATGCCCTTTGCTCCCAAAAGACAAAAAACATGCTCGGAAAAAACCTCCTCCGATTTCTTCGAATCTTTGCCGGACGATCTTCTTCTTTCTATCCTCTGCAAACTCAGTGCCACCGCATCTTCACCCTCCGATTTCATCAGTGTCTTAATAACGTGCAAGAGACTAAACTCCTTGGGCCTTCACTCTCTGGTGTTATCAAAAGCATCCCACAAAACATTCTTAGTCAAACCCCAAAATTGGTGTGATTCTGTTCACCGCTTCCTCAAACACTGTGCCGATGCCGGAAACATTGAAGCCTGTTACACTCTCGGCATGATTCGGTTTTATTGTCTGCAAAACAGGGGGAGCGGCGCGTCGCTGATGGCGAAGGCGGCTATGAACTCTCACGCCCCGGCGCTGTACTCACTCGCGGTGATACAATTCAACGGAAGCGGCGGCACGAAAAACGACAAGGACCTTCGGGCCGGAGTGGCGCTGTGCGCACGCGCGGCATTTCTCGGTCACATCGACGCGCTGCGTGAGCTTGGTCATTGTTTGCAAGACGGTTACGGCGTTAAACAGAACGTAGCAGAAGGTCGACGCTTTTTGTTGCAAGCCAACGCGCGTGAACTCGCCGCCGTGCTCTCCGCCGCAAACAACAAGCGTCCCTGGGTGACGTGGAACCTCCCGGTTCCTCACCCGCGACTCCGGTCGGGAACCGGGTCAGGCTGTCCGTTGCTGAGTGATTACGGTTGCAACGTGCCGGCGTTGGAGACTCATCCGGCGAGTAAGTTTTTGTCCGAGTGGTTTGTTATTCGGAGCGGGTCGCTAGGTTCGGGTACGAGGCTGTGTTCACATTCGGGTTGCGGTCGACCCGAGACAAGGAGGCACGAGTTCCGAAGGTGTTCGGTTTGCGGTGTGATGAATTATTGCTCACGCGCGTGTCAGGCGCTTGATTGGAAATTCCGGCACAAGGCGGAATGTACTCCCGTTGAGGGATGGCTCCATGACGACGGGGAAGAAGTGGTCGGCGAGGATGTCGGTGGCGGCGACGCCGTAATGGCTAATAGTTAG 1065 0.5484 MSADMPFAPKRQKTCSEKTSSDFFESLPDDLLLSILCKLSATASSPSDFISVLITCKRLNSLGLHSLVLSKASHKTFLVKPQNWCDSVHRFLKHCADAGNIEACYTLGMIRFYCLQNRGSGASLMAKAAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVAEGRRFLLQANARELAAVLSAANNKRPWVTWNLPVPHPRLRSGTGSGCPLLSDYGCNVPALETHPASKFLSEWFVIRSGSLGSGTRLCSHSGCGRPETRRHEFRRCSVCGVMNYCSRACQALDWKFRHKAECTPVEGWLHDDGEEVVGEDVGGGDAVMANS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01888 354 SUPERFAMILY HIT/MYND zinc finger-like 280 330 - -
Spst1g01888 354 Gene3D - 273 329 - -
Spst1g01888 354 CDD F-box_SF 25 62 - -
Spst1g01888 354 ProSiteProfiles Zinc finger MYND-type profile. 283 325 IPR002893 -
Spst1g01888 354 FunFam Predicted protein 273 330 - -
Spst1g01888 354 SUPERFAMILY F-box domain 16 82 IPR036047 GO:0005515
Spst1g01888 354 PANTHER MYND DOMAIN-CONTAINING 9 342 IPR044508 -
Spst1g01888 354 Pfam MYND finger 286 325 IPR002893 -
Spst1g01888 354 Gene3D Tetratricopeptide repeat domain 85 219 IPR011990 GO:0005515
Spst1g01888 354 SUPERFAMILY HCP-like 90 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01888 Spst-Chr1 27037129 27038405 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01888 - - var:108319040 635.95