Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01882 ATGAAGCAGGAAGGTAGAGGGGAGATGTGGAGGGTGGGCCTGGGCCTGGGCCTGATGGTGGTGATGGCGTCCTGTGGGTGGCTGAAGGGGGCGGATGGCGCCGATGATTTGGCGAACAAGTGCGGACAGGTGATGCAGAAGGTTCTTCCGTGTCTGGGTTTCGTGTCGGGGAAGGAAGCGAAGCCGAAAGAGGAATGCTGCGACGCAACGGAGAGCATAAAGGAGACCAACCCGGAGTGCTTGTGTTACGTCATTCAACAGACCCACAAGGGTAGCCCAGAGATCAAAAGCCTCGGCATTCAAGAGTCCAAGTTGCTCCAACTCCCTTCCGTTTGTCAAGTCAAAAACGCCAGCATCAGCGACTGTCCCAAGCTTCTGGGTCTATCTCCAAGTTCCCCTGATGCTGCAATCTTCACAAATTCTTCCAAGGTAACTCCTGTAACACCAAGCGCACAGAGTACGACCCCACAAAGCCAAAACGCTTCGTATGGAAGTATGGCTAGACCTAGTATTATGATGATGATGATGATGACCACAGTTCTGGCTGCAATTTCACCTGTTTTTGCGAGCATTTAA 576 0.5243 MKQEGRGEMWRVGLGLGLMVVMASCGWLKGADGADDLANKCGQVMQKVLPCLGFVSGKEAKPKEECCDATESIKETNPECLCYVIQQTHKGSPEIKSLGIQESKLLQLPSVCQVKNASISDCPKLLGLSPSSPDAAIFTNSSKVTPVTPSAQSTTPQSQNASYGSMARPSIMMMMMMTTVLAAISPVFASI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01882 191 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Spst1g01882 191 MobiDBLite consensus disorder prediction 144 163 - -
Spst1g01882 191 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 20 172 IPR043325 -
Spst1g01882 191 Pfam Probable lipid transfer 35 122 IPR016140 -
Spst1g01882 191 SMART aai_6 41 122 IPR016140 -
Spst1g01882 191 PRINTS Plant phospholipid transfer protein signature 99 116 IPR000528 GO:0006869|GO:0008289
Spst1g01882 191 PRINTS Plant phospholipid transfer protein signature 61 75 IPR000528 GO:0006869|GO:0008289
Spst1g01882 191 PRINTS Plant phospholipid transfer protein signature 40 56 IPR000528 GO:0006869|GO:0008289
Spst1g01882 191 Gene3D - 38 119 IPR036312 -
Spst1g01882 191 CDD AAI_LTSS 48 114 - -
Spst1g01882 191 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 39 122 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01882 Spst-Chr1 27000392 27002397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01882 10 188 Acyl Lipid Metabolism Gene Families AT1G27950 45.556 9.62e-49 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01882 - - gmx:100499777 241.506