Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01881 ATGTCTCGGGTTGATAACAGAAATTCCTCAGCCGCCAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACTTGCCCCAGCTGTGGCAATGTCAACTTTTCTTTCAGAACAACTTGTAACATGCGTAATTGCACTCAACCTAGGCCAGCTGATCACAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCCCAGGGTTATCCATCCGCAGCTCCTTATTTAGGTTCTAATGCTCCCTCTTCTATATATCTTGGTGTCCCACCATATGGGTCTTCTCTGTTCAATGGATCATCTGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGTCTTTCTGCTGGCAGTCCTTATAGACCACTGCATTTATCTGGACCTGCACCCTACACAGGTGGACCAGTGATGGGAAATGGTGGGATCTATGGGATGCCCCAACTATTGGACCGGTATGGCCTGGGTGTGCCTATTGGACCTGGGACAATGGGTGCTAGGCCTGGGTTTTTTCATGATGACAAGTCTCAGAAAAAAGATGCAACTCGTGACAACGACTGGACATGTCCAAAATGTGGCAATGTCAATTTCTCATTCAGAACTGTCTGCAATATGAGAAAGTGCAACACACCCAAACCTGGATCCCAGGCCTCAAAGTCTGACAAAAACTCTAAACAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGCAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGAGTCTGACAAATCTCCTTCACCATCTGCAGATCAAAATGATCAGACTAGAATACATGAAACAAAATGCAAGGATCAACAGATGATTTCAGGGATGGCCTTAGATGTCTATAAATATAACCGAATCGGGGACTATAAATCTATGCAAAGGATGGTTGGGATAAGAGATGAAGTATCTCGATATTGTACTCCGAAGAAGCTTTCAATATGCTTTGTTCTCGGAGCACGTCGAACATTATTAGTTCATAAAAGGTGGACTTCCTTCACGAACAATTCGGCACAAAGGTTGCTAGTGCTAGTAGGGCTTCTTTATTCATTGGTCTCATTACGTTAG 1137 0.445 MSRVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYPSAAPYLGSNAPSSIYLGVPPYGSSLFNGSSVPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPAPYTGGPVMGNGGIYGMPQLLDRYGLGVPIGPGTMGARPGFFHDDKSQKKDATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESDKSPSPSADQNDQTRIHETKCKDQQMISGMALDVYKYNRIGDYKSMQRMVGIRDEVSRYCTPKKLSICFVLGARRTLLVHKRWTSFTNNSAQRLLVLVGLLYSLVSLR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01881 378 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 161 227 - -
Spst1g01881 378 SUPERFAMILY Ran binding protein zinc finger-like 184 223 IPR036443 -
Spst1g01881 378 MobiDBLite consensus disorder prediction 9 25 - -
Spst1g01881 378 MobiDBLite consensus disorder prediction 264 284 - -
Spst1g01881 378 SMART zf_4 24 50 IPR001876 -
Spst1g01881 378 SMART zf_4 193 219 IPR001876 -
Spst1g01881 378 SMART zf_4 239 265 IPR001876 -
Spst1g01881 378 MobiDBLite consensus disorder prediction 218 240 - -
Spst1g01881 378 Pfam Zn-finger in Ran binding protein and others 237 267 IPR001876 -
Spst1g01881 378 Pfam Zn-finger in Ran binding protein and others 192 221 IPR001876 -
Spst1g01881 378 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Spst1g01881 378 Gene3D - 182 223 - -
Spst1g01881 378 Gene3D - 226 269 - -
Spst1g01881 378 Gene3D - 14 54 - -
Spst1g01881 378 FunFam ranBP2-type zinc finger protein At1g67325-like 15 54 - -
Spst1g01881 378 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Spst1g01881 378 SUPERFAMILY Ran binding protein zinc finger-like 231 268 IPR036443 -
Spst1g01881 378 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01881 Spst-Chr1 26985046 26989209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01881 194 270 EF-hand Containing Proteins AT1G55040 31.169 3.15e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01881 - - gmx:100798624 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01881 1 26985046 26989209 Spst1g01881 1 26985046 26989209 ECH