Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01863 ATGCCCATTTTCTCTGCAACTGCAACGTTCGGCTCCTTCACTTCCGTCTCCTTCCTCTCTGCTTCACAATCTCAATCGCACCCTTCTCCTTTCCTCAATTTCCCCCATAAGTTTAATGTGAAGACACCTTGGCAATGGCAGCACCCTCACTATCACACTGATAAAGTAATCTATGCCTCTGGAAATACCCAAATTGACCGAAATCTTGAAAGTGGACTTCTTCAACGCCCAACTCCTCCAGACCCACAGGATGACGCTCGTCAGGCTCGGAGGTCATCAGATTGGAAGGCTGCAAAAGCATATAAAGATAGTGGACTCCTTTATAACGGTAGGGTTGAAGGTTTTAATTCTGGAGGCCTGCGTGTACGGTTTTATTCCATTCTGGGGTTTCTCCCATTCCCAGAATTGAGTCCATTGCATACTTGTAAAGAACCAGAGAAACCTATCCAAGAAATTGCAAAAGGCTTAATTGGTTCAATCATATCAGCAAAGGTAATTCTAGCAGATGAGGATAACAAGAAATTAATATTCTCTGAAAAGGAAGCTGTCTGGTCCAAATTTTCAAAAGATGTCAATATAGGGGACATTTTTGAAGGAAGAGTTGGTTATGTTGAGGACTATGGTGCTTTTGTTCATTTGCGCTTCCCTGACGGTCTTTATCGCCTTACTGGACTAATACACATCTCAGAAGTGTCATGGGATCTAGTTCAAGATGTCAGAGATATCTTAAAAGTAGGTGACCAAGTGAGGGCCAAGGTTGTCGGTATTGATTGGGTAAAATCAAGGATTACCCTATCAATTAAACAGCTAGAAGAAGATCCACTTCTAGAAACCCTGGACAAAGTAATACCTCAGGATGGTTTAGCTGCTCTTGATTCTATGAGCGGGAGCGGTGGTGACAGTGATAGTATTGAACCTCTCCCGGGGCTTGAAACAATACTTGAAGAGCTACTACAGGAAGATGGTATAAATGATGTAAGAATCAGCCGTCAAGGGTTTGAAAAACGAGTGGTCTCGCAAGACTTACAACTTTGGCTTTCTAATGCACCTCCCACGAACCAAAAATTTACTCTCCTTGCTCGTGCTGGAAGACAGGTGCAGGAGATACATTTGACTACATCTCTTGATCAGGAAGGTATCAAGAAGGCATTACAACGAGTGTTGGAGCGTGTCCCCTAA 1179 0.4326 MPIFSATATFGSFTSVSFLSASQSQSHPSPFLNFPHKFNVKTPWQWQHPHYHTDKVIYASGNTQIDRNLESGLLQRPTPPDPQDDARQARRSSDWKAAKAYKDSGLLYNGRVEGFNSGGLRVRFYSILGFLPFPELSPLHTCKEPEKPIQEIAKGLIGSIISAKVILADEDNKKLIFSEKEAVWSKFSKDVNIGDIFEGRVGYVEDYGAFVHLRFPDGLYRLTGLIHISEVSWDLVQDVRDILKVGDQVRAKVVGIDWVKSRITLSIKQLEEDPLLETLDKVIPQDGLAALDSMSGSGGDSDSIEPLPGLETILEELLQEDGINDVRISRQGFEKRVVSQDLQLWLSNAPPTNQKFTLLARAGRQVQEIHLTTSLDQEGIKKALQRVLERVP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01863 392 Pfam S1 RNA binding domain 191 268 IPR003029 GO:0003676
Spst1g01863 392 ProSiteProfiles S1 domain profile. 105 180 IPR003029 GO:0003676
Spst1g01863 392 SMART S1_6 103 180 IPR022967 -
Spst1g01863 392 SMART S1_6 192 268 IPR022967 -
Spst1g01863 392 MobiDBLite consensus disorder prediction 70 94 - -
Spst1g01863 392 SUPERFAMILY Nucleic acid-binding proteins 105 180 IPR012340 -
Spst1g01863 392 PANTHER OS03G0844900 PROTEIN 14 392 - -
Spst1g01863 392 SUPERFAMILY Nucleic acid-binding proteins 181 273 IPR012340 -
Spst1g01863 392 Gene3D - 95 183 IPR012340 -
Spst1g01863 392 Gene3D - 184 280 IPR012340 -
Spst1g01863 392 ProSiteProfiles S1 domain profile. 194 268 IPR003029 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01863 - - gmx:100786308 613.994