Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01862 ATGGCTGAGCATGATGGATTCAACACGCTTCAATACTTGTCGCTCCTCTCCAAAGTCTGCACCGAGTTGGAGTTCCACACCGGCTCTGCCGACAAGTTCCTCGCCGAGTTCATCATCCACTTGGCTCGTTCATCCGACAACCTTCACCAATTCAACGCCAAACTCAAGGACAACGGTGCCCATTTGCCCGATTACCTTGTCCAAACACTCTTCACCCTTGTTCACGCAGTTCTTATTCCCGATAAGATAGAGTCCAAAGACAGAGAAGATGCCAGTGGTAGTTCTTCGCGGAAACCTCTCAAGAAGATCATCTCCTTTCCGGAAAAATGGGAAGAAAACAAGTTGATTGGTTCCGGAAACTTGAGTTCTCCAGATAAAGATGAGGAGGGAGATGGATTGTTTCGCCAAGAAGAAGGAGCTGATGAGGATCTTGAGATTGAGTTGAATGATGATGCACCTGCATTCTTGCAGGGGCTCACCAAACACTCCTTGGACATGTCTCCTCCTAAGATTTTCAAAAATCCAGAAGGTTCTCTGCTTCGCTGTGCTGCACTTCAGTCTGCACTTGCTAAGGAACGAAAGGAACTGAGAGAACAACAGCATAGTTCAATGTTTGATTCGATTCCAAAGGACCTCAATCGCCCTTGGGAAGACCCTATGCCGGAGAAAGGTGAAAGACACCTTGCTCACGAGCTTAAGGGTGTTGGTTTATCTGCGTTTGACGTGCCCGAGTGGAAGAAAGAGAACTTCGGAAAAACAATTTCCTTTGGGCCGAAATCAAAGCTTTCCATTCTGGAGCAGAGGCAGAGTTTGCCAATTTATAAATTGAAAAATGAATTGATTCAGGCTGTTCATGATAATCAGGTGTTGGTGGTTGTTGGAGAAACCGGTTCTGGGAAGACAACTCAGATTACACAGTATCTTGCTGAAGCGGGGTACACGACAGAGGGGAAAATTGGATGTACTCAACCACGGAGGGTGGCTGCAGTGTCTGTTGCAAAGAGGGTAGCAGAAGAGTTCGGTTGTCGATTGGGGGAGGAAGTTGGTTATGCCATTCGGTTTGAGGATTGCACTGGATCAGATACTGTCATCAAGTACATGACAGATGGTACGCTTCTTAAGGAAGTGCTGATGGATCAGAATCTCTCACGGTATTCTGTTATAATGCTTGATGAAGCCCATGAAAGAACTGTTAATACTGATGTTCTTTTTGGACTGCTGAAGCTGCTACTGAAGCGTAGGCCTGAATTGAGATTGATTGTCACGTCTGCTACTCTTGATGCTGAGAAGTTTTCAGGATATTTCTTTGACTGTAACATCTTTACAATCCCTGGTAGAACTTTTCATGTGGAGATACTTTATGCTAAACAGCCTGAGAGTGATTACTTGGATGCAGCTTTAATCACTGTTCTGCAAATCCACTTGACAGAACCTGAAGGAGACATTCTTCTCTTCTTGACTGGTCAAGAAGAGATTGATTTTGCTTGTCAATCTCTTTATGAGAAAATGAAGGGTTTAGGTAAGAATGTTCCAGAGCTCATCATTTTACCTGTGTATAGTGCTCTTCCTAGTGAAATGCAGTCCAGGATATTTGAACCTGCTCCACCTGGGAAAAGGAAAGTGGTTGTGGCTACTAACATTGCTGAGGCTTCTTTGACCATTGATGGAATATTGTATGTAGTTGATCCTGGATTTGCTAAGCAGAATGTTTATAACCCAAGGCAAGGTCTTGACTCTTTGGTGATAACTCCAATTTCACAAGCATCAGCCAAACAAAGAGCAGGACGTGCAGGGCGTACCGGACCTGGTAAGTGTTTTCGTCTCTATACTGAGAGTGCATATAGGAATGAGATGTGTCCCACTACAATTCCGGAGATTCAAAGGATAAATCTAGGAACAATTACTCTTAATATGAAAGCTATGGGGATAAACGATCTATTGTCCTTTGATTTTATGGATTCACCTTCACCCCAGGCACTTGTTTCTGCTATGGCGCAGCTTTACAGTCTTGGAGCATTGGATAAAGAGGGCATGTTAACCAAATTGGGTAGGAAAATGGCAGAATTTCCTTTGGATCCACCATTGTCCAAGATGCTTCTTGCTAGTGTGGATCTTGGATGCAGTGATGAGATTTTGACGATAATTGCCATGATCCAAACCGGCAATATTTTTTACAGGCCAAGGGAAAAGCAAGGCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCGGAGGGTGACCATCTTACGCTACTTGCTGTCTATGACGCTTGGAAATCTAAAAATTTTTCAGGGCCGTGGTGTTCTGAGAACTTTCTCCAATCCCGATCGTTGAGAAGAGTCCAGGATGTCCGGAAACAGCTTCTCACCATCATGGATAGGTACAAATTGGATGTTGCAAGTGCTGGAAATAACTTCACCAAAGTCATGAAGGCTACCACTGCAGGATTCTTTTTCCATGCTGCTAGAAAGGACCCTCGGGAAGGTTACAGAACCCTGTTTGAGAACCAGTCTGTATATATCCATCCAAGTTCAGCTTTGTTCCAGAGACAGCCAGACTGGGTCATCTACCACGAGCTTGTGATGACAACGAAGGAATATATGCGCGAGGTCACAGCCATAGACCCTAAGTGGCTAGTTGAATTGGCTCCAAGATTATTCAAAGCTGCAGATCCTACAAAGATGAGCAAGCGAAAGTCTCAAGAACGTATAGAACCACTTTATGATAGATACAACGAGCCAAATTCCTGGCGTTTGAGTAACCGCCGTGCATGA 2775 0.4447 MAEHDGFNTLQYLSLLSKVCTELEFHTGSADKFLAEFIIHLARSSDNLHQFNAKLKDNGAHLPDYLVQTLFTLVHAVLIPDKIESKDREDASGSSSRKPLKKIISFPEKWEENKLIGSGNLSSPDKDEEGDGLFRQEEGADEDLEIELNDDAPAFLQGLTKHSLDMSPPKIFKNPEGSLLRCAALQSALAKERKELREQQHSSMFDSIPKDLNRPWEDPMPEKGERHLAHELKGVGLSAFDVPEWKKENFGKTISFGPKSKLSILEQRQSLPIYKLKNELIQAVHDNQVLVVVGETGSGKTTQITQYLAEAGYTTEGKIGCTQPRRVAAVSVAKRVAEEFGCRLGEEVGYAIRFEDCTGSDTVIKYMTDGTLLKEVLMDQNLSRYSVIMLDEAHERTVNTDVLFGLLKLLLKRRPELRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFHVEILYAKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYEKMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGILYVVDPGFAKQNVYNPRQGLDSLVITPISQASAKQRAGRAGRTGPGKCFRLYTESAYRNEMCPTTIPEIQRINLGTITLNMKAMGINDLLSFDFMDSPSPQALVSAMAQLYSLGALDKEGMLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQGQADQKRAKFFQPEGDHLTLLAVYDAWKSKNFSGPWCSENFLQSRSLRRVQDVRKQLLTIMDRYKLDVASAGNNFTKVMKATTAGFFFHAARKDPREGYRTLFENQSVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTAIDPKWLVELAPRLFKAADPTKMSKRKSQERIEPLYDRYNEPNSWRLSNRRA 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01862 924 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 386 395 IPR002464 -
Spst1g01862 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 795 IPR027417 -
Spst1g01862 924 Coils Coil 182 202 - -
Spst1g01862 924 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 646 745 - -
Spst1g01862 924 PANTHER ATP-DEPENDENT RNA HELICASE 217 890 - -
Spst1g01862 924 SMART helicmild6 497 601 IPR001650 -
Spst1g01862 924 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 810 885 IPR011709 -
Spst1g01862 924 Gene3D - 242 446 IPR027417 -
Spst1g01862 924 SMART ha2_5 662 752 IPR007502 GO:0004386
Spst1g01862 924 SMART ultradead3 269 453 IPR014001 -
Spst1g01862 924 CDD GH2-like_DHX8 10 76 - -
Spst1g01862 924 Gene3D - 447 620 IPR027417 -
Spst1g01862 924 Pfam Helicase conserved C-terminal domain 469 601 IPR001650 -
Spst1g01862 924 Gene3D - 646 744 - -
Spst1g01862 924 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 462 642 IPR001650 -
Spst1g01862 924 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 447 621 - -
Spst1g01862 924 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 237 446 - -
Spst1g01862 924 Pfam Helicase associated domain (HA2) 663 751 IPR007502 GO:0004386
Spst1g01862 924 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 444 IPR014001 -
Spst1g01862 924 CDD SF2_C_RHA 448 609 - -
Spst1g01862 924 Pfam DEAD/DEAH box helicase 278 427 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01862 Spst-Chr1 26813717 26816680 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01862 K12818 - gmx:100815173 1501.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00868 2 7332112 7333542 Spst1g01862 1 26813717 26816680 PCT