Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01860 ATGGCGCCTCCCCTGGCCAAAGTTCTGATGGTCGCAGAGAAACCTAGCATCGCTCTATCTATTGCTTCTGTTCTCTCTCGCTCTCAGGTACTCATTTCGCATCCTCTCCAAATTCACGGTGAGTGGCATGCAAAGCAAGAAATTCTCTATTACGATGCTGTTGCACAACTTCCATATGATCAAAGGAAGGAAAAGATAGTGCACCATGTAGATTTTCCTGCTAAATATCAAGATTGGTCAGCCACAGATCCGTTAGATCTTTTTCAGGCTCAGGTTATAAAGAATGAGTCAAACCCAAAGTGTACTGGTTTCAAAACAAATGATACTTATCGTGCACGGTTCTCTTCTGTTACTGAGAAAGATGTTGTGAATGCTTTAGATAACCTTGTCAGACCTAACAAAGACGAGGCATTAGCTGTAGATGCTAGGCAAGAGATAGATTTGAAGGTTGGAGTTGCCTTTACTCGATTTCAAACAAGTTATTTCCAGGGAAAATATGGGAACCTAGATTCCAGGTTGTTGATTATGATGATGATTGTGATGGAACCAAATGAGAAGGACTACCACAGGGGTAGTGAGCTAGCACATGAGGACAAAAAGTTTGTTTACAACAGTAGACAGGTGGCAAAAGATCACGAAAAGAGGGGAGTGCGAACAACCAGAGAGAGGAAACCAAATCCCAAATTACTTGATTACGAGAAATGTCAGCCAGTTGAGACTACTGAATCACACAAGTCTGCTAACATCTTTAAGTCCACAATGCTTAAAAGCCTCGATCTGTTTCTGCAAGTCAAAAAGAAAAGACTGATCAAATTTTTTATTCTTCTTGCAAATACTGCTGATCTCAAGATCAGCTTGGACCTGAGACTGTTTTTGATTGTGCTAATTGCTGCCAATGTCAGCTATGGACCGTGTCAGACTCCTACTTTAGGATTTTGCGTGCAGCGGTATTTACAAATAAACACTTTCAAGCCAGAAAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAATGGCTATGAAATTCAGCTAGAATGGCAACGTGGGAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTGGTTTCCGAGGATGGACTTTTGGAAGTTACTGAAATATCAGAAAAGCAAGAAACCAAAAGTCGCCCTGTTGGTCTAAACACAGTGAATCTTCTAAAGGTTGCTTCAAGTGCTCTAGGATTTGGACCTCAGATGGCTATGCAACTAGCTGAACGGTTGTATACTCAAGGATTCATCAGCTATCCACGCACGGAAAGTACAGCATACCCTCCTTCATTTGACTTTCGTGGTGTACTCTCTGCACAAGCAAATAATCCAACATGGGGTAATTATGTACAAGGGCTACTTACCACTGGTTATCAAAAGCCTCGATTGGGAACAGATGCAGGTGACCATCCTCCCATTACTCCAATGATATCAGCAGCAGAAGATATGCTGGGCAATGATGCTTGGAAGCTGTACCAATATATTTGTCAACACTTCATAGGTACAGTGTCTCCCGACTGCAAGTATATAAGGAGAAAGGTTGAGTTTTCCATTGGCGGAGAGTCCTTTCATTGTATAGGGCAGCAGGTTGTCACCAAAGGATTTACTGCTATTATGCCTTGGTTGGCCTTAAATGATAAAAATATTCCATCGTTTATAAAAGGGCAGAAAATAGAAGTATCAAAACTGGAGTTCTATGAGGGGAGTACCAGTGCTCCAGATTACCTTACCGAAAGTGAGCTGATATCCCTGATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCTGTACACATTAACAACATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGCAGAAAGCTTGTCCCAACCACATTAGGCATAACATTAGTAAGAGGTTACCAAACTATAGATCCAGATCTCTGCCTGCCTGATATTCGTAGCTTCATTGAGCAACAAATTACTCTTATTGCCAAGGGTCAGGTGGATCATCGTCATGTGGTGCAGCATGTAATCCAACAGTTCAAGCAGAAGTTTAGTTACTTTGTCAAAAAGATTGAAGACATGGATGCATTGTTTGAAGCACAGTTTTCTACGCTTACCGATTCAGGACGAATTCTGAGTAAATGTGGTAAATGCTTGAGATATATGAAGTACATTTCTACTCAGCCTTCACGATTGTATTGTGGTACATGTGAGGAGGTCTATTATCTTCCACAGAAGGGAGCAATCAAGCTGTACAAAGAGCTGTCTTGTCCTTTAGACAATTTTGAGCTTTTGATTTGCTCCATGCCTGGTCCGGATGGTAAATCATTCCCACTATGCCCATACTGCTACAGTAATCCCCCATTTGAAGGCATTGAAGCACTCATCAATACCGCTAAAACTGGTACTGCTGGCAAGATTGGCAAGGGAGCTGGCATGCCCTGCAGCCTATGCCCTCATCCCAGTTGCCCAAATTCTCTGGTTTCCCAGGGTGCTGGCTCAGCTCAGCTCAGCACAGCAAAATTAATTCTTAAAACGCACCACACAACACCCACCCTTCTAAGCACTGCGCTTCTGCTCTCTCCCCTTCTCTCTCTGCAACTGCAAGCTTAG 2598 0.423 MAPPLAKVLMVAEKPSIALSIASVLSRSQVLISHPLQIHGEWHAKQEILYYDAVAQLPYDQRKEKIVHHVDFPAKYQDWSATDPLDLFQAQVIKNESNPKCTGFKTNDTYRARFSSVTEKDVVNALDNLVRPNKDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDSRLLIMMMIVMEPNEKDYHRGSELAHEDKKFVYNSRQVAKDHEKRGVRTTRERKPNPKLLDYEKCQPVETTESHKSANIFKSTMLKSLDLFLQVKKKRLIKFFILLANTADLKISLDLRLFLIVLIAANVSYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQNGYEIQLEWQRGKLFDINVAMMFQKLVSEDGLLEVTEISEKQETKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFRGVLSAQANNPTWGNYVQGLLTTGYQKPRLGTDAGDHPPITPMISAAEDMLGNDAWKLYQYICQHFIGTVSPDCKYIRRKVEFSIGGESFHCIGQQVVTKGFTAIMPWLALNDKNIPSFIKGQKIEVSKLEFYEGSTSAPDYLTESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQTIDPDLCLPDIRSFIEQQITLIAKGQVDHRHVVQHVIQQFKQKFSYFVKKIEDMDALFEAQFSTLTDSGRILSKCGKCLRYMKYISTQPSRLYCGTCEEVYYLPQKGAIKLYKELSCPLDNFELLICSMPGPDGKSFPLCPYCYSNPPFEGIEALINTAKTGTAGKIGKGAGMPCSLCPHPSCPNSLVSQGAGSAQLSTAKLILKTHHTTPTLLSTALLLSPLLSLQLQA 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01860 865 SUPERFAMILY Prokaryotic type I DNA topoisomerase 280 719 IPR023405 -
Spst1g01860 865 SMART topIban2 108 330 IPR003601 GO:0003677|GO:0003916|GO:0006265
Spst1g01860 865 Gene3D - 2 106 - -
Spst1g01860 865 Gene3D Topoisomerase I, domain 3 324 577 IPR013825 -
Spst1g01860 865 SUPERFAMILY Prokaryotic type I DNA topoisomerase 6 167 IPR023405 -
Spst1g01860 865 Gene3D Topoisomerase I, domain 2 300 679 IPR013824 -
Spst1g01860 865 Gene3D Topoisomerase I, domain 4 384 509 IPR013826 -
Spst1g01860 865 FunFam DNA topoisomerase 384 509 - -
Spst1g01860 865 PRINTS Prokaryotic DNA topoisomerase I signature 300 318 IPR013497 GO:0003677|GO:0003916|GO:0006265
Spst1g01860 865 PRINTS Prokaryotic DNA topoisomerase I signature 593 607 IPR013497 GO:0003677|GO:0003916|GO:0006265
Spst1g01860 865 PRINTS Prokaryotic DNA topoisomerase I signature 418 427 IPR013497 GO:0003677|GO:0003916|GO:0006265
Spst1g01860 865 PRINTS Prokaryotic DNA topoisomerase I signature 495 511 IPR013497 GO:0003677|GO:0003916|GO:0006265
Spst1g01860 865 CDD TOP1Ac 276 679 IPR013497 GO:0003677|GO:0003916|GO:0006265
Spst1g01860 865 SMART topIaneu2 376 631 IPR003602 GO:0003677|GO:0003916|GO:0006265
Spst1g01860 865 Pfam DNA topoisomerase 298 669 IPR013497 GO:0003677|GO:0003916|GO:0006265
Spst1g01860 865 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 413 427 IPR023406 GO:0003917
Spst1g01860 865 PANTHER PROKARYOTIC DNA TOPOISOMERASE 107 172 IPR000380 GO:0003677|GO:0003917|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01860 Spst-Chr1 26794156 26805456 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01860 K03165 - gmx:100791807 1050.04