Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01856 ATGTCGGAGATGGCGAGCCCAGATCCCGAGGGAGTGGACGGAGTCCGCATGACGTGGAACGTGTGGCCCCGCACGAAGGTGGAATCCAGCAAGTGCGTCATCCCTCTGGCCGCCACCGTGGCCCTCATCCGCCCCCACCCTGACATCCCCCGCCTCCAGTATGCCCCTCTCCGCTGCAAGACGTGCTCCTCCGCCCTCAACCCGTTCTCCCGCGTCGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGCTACCAGCGCAACCACTTCCCCCCTCACTACCACGCCATCTCCGAAACCAGCTTCCCCGGAGAACTCTACCCCCAATACACCACCGTCGAGTACATCCTCCCCCTCTCCAATTCCCTCAACCCTTCCCCCGTTTTCCTCTTCCTTCTCGATACCTGTCTCATCGAGGAGGAGATCCAGTTCCTCAAATCCGCGTTTCGTCGCGCCATTGGCCTTCTTCCTGATAATGCCCTCGTCGGCTTCGTCTCCTTCGGTACGCAGGTCCAGGTTCACGAATTGGGCTTCTCCGACATGTCCAAGGTTTATGTCTTCCGCGGCTCCAAGGAGATTCCCGCCGATCAGATTCTCGATCAGCTAGGCCTTTCTGCTTCGGGGAGAAGACCTCACAAGGGCTCCGCCACTCTCGCCGGCGTCGCCGGATTCCCCAGTTCCGGCATCACCCGATTCTTGTTGCCTGCTTCTGAGTGTGAATATACACTCAATGCGCTGTTAGATGAATTGCAGACGGATCAGTGGCCGGTTCCGCCCGGTCGCCGCCCTGCACGCTGCACTGGGGTTGCTTTGAGTGTTGCTGCGGGGTTGCTGAGTGCTTGTAATCCTGGGACTGGTGCTAGAATCATAACATTGGTTGGGGGGCCGTGCACGGAAGGACCTGGGGCGCGTTCAAGTTTCATGGATGATCTGCTTTACGAGACACTGCTCTTAAAACTGGCTGTGCAAAATTTTGATATTTCTGTTTTGTCACTTGCATGGAAGGAGACTTGTAGCGAACGTAAGCAATTGGGCATCCCGCAGTTACTGTTTATTAGGATATTCCTAAGATTTGATTTCTTCCGTCAAGTGTCATTGGGATTTGGGACAAAGAATAATTGGGTGCAATTCTTCCTTAATTTAGAGCTTAGAGGACTAAAGGTTTTATGGCAAACTTCGAATACGCAGAAGGGATCTGTGGTGAATGCTATGCTTGCTATTGTGTCAAAAGATCTATCTGACCCGGTTCGTTCTCATAAAGATCTTGATAAAGATGCAGCACCATACTTCAAGAAAGCAGTCAAATTTTATGAGGGTCTTGCTAAACAGCTGGTTAGCCAGGGTCACGTTTTAGATATATTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATTAAAGTTGCAGTTGAAAGAACTGGTGGTCTTGTAGTCCTAGCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAGCGAGTTTTTGAGGATGGGGAACAATCTCTTGGTCTTTGTTTCAATGGAACCCTGGAGATAAATTGCTCCAAGGAAATCAAAATTCAGGGAGTGATTGGGCCTTGCACTTCCTTGGAAAAGAAAGGGCCTTCTGTTGCTGATACTGTTATAGGAGAGGGAAACACAACAGCATGGAAGATGTGTGGCCTTGACAAAAGTACGTGCTTGACCGTGATGTTTGATCTTTCATCAAGTGATCGGGCAAACACTCCAGGTGCTGTCAACCCACAATTGTACTTGCAGTTCCTTACAAGCTATCAGGACCCAAATGGTCAATCAGTGCTTCGTGTCACAACAGTAACTAGAAGATGGGTAGATAGTACTGTTAGCTCCGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCAGCAGTTGTAATGGCTAGATTTGCTTCTCTAAAAATGGAGAGTGAGGAAACATTTGATGCTACACGATGGTTGGATAGGTTTCTCATTCGCCTCTGTTCTAAGTTTGGTGACTACCGCAAGGATGATCCATCATCTTTTACATTAAACCCATCTTTTTCACTTTTCCCTCAGTTTATGTTCAATCTGCGGCGTTCACAGTTTCTACAGGTTTTTAACAACAGTCCAGACGAGACTGCATATTTCCGCATGTTGTTAAATAGGGAAAATATTAGTAATGCTGCTGTAATGATTCAGCCGTCACTGATAGCATATTCATTTAATTCACTGCCTGCACCAGCGTTGTTAGATGTGGCTTCCATTGCAGCAGACCGGATTTTGTTACTAGATTCTTATTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGTAACTTGGGATACCAGAACCAACCAGAACACCAGGCATTTGCACAACTACTACGAGCTCCGCATGATGATTCTGAAATGATAATTAGAGAACGGTTCCCAGTTCCTAGATTGGTAGTGTGCGACCAACACGGTTCCCAGGCTAGATTTTTATTAGCAAAACTGAATCCCTCAGCAACGTATAATAATGCACATGAGATGGCTGCTGGTTCAGATGTAATCTTTACTGATGATGTGAGTCTTCAAGTTTTCTTCGAGCATCTGCAGAGGTTGGCTGTCCAATCTTGA 2610 0.4789 MSEMASPDPEGVDGVRMTWNVWPRTKVESSKCVIPLAATVALIRPHPDIPRLQYAPLRCKTCSSALNPFSRVDFTAKIWICPFCYQRNHFPPHYHAISETSFPGELYPQYTTVEYILPLSNSLNPSPVFLFLLDTCLIEEEIQFLKSAFRRAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGSKEIPADQILDQLGLSASGRRPHKGSATLAGVAGFPSSGITRFLLPASECEYTLNALLDELQTDQWPVPPGRRPARCTGVALSVAAGLLSACNPGTGARIITLVGGPCTEGPGARSSFMDDLLYETLLLKLAVQNFDISVLSLAWKETCSERKQLGIPQLLFIRIFLRFDFFRQVSLGFGTKNNWVQFFLNLELRGLKVLWQTSNTQKGSVVNAMLAIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDIFASALDQVGVAEIKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGVIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRANTPGAVNPQLYLQFLTSYQDPNGQSVLRVTTVTRRWVDSTVSSEELVQGFDQETAAVVMARFASLKMESEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFLQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLIAYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDSEMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01856 869 CDD Sec23_C 717 837 IPR037550 GO:0030127|GO:0090114
Spst1g01856 869 Gene3D von Willebrand factor, type A domain 396 501 IPR036465 -
Spst1g01856 869 Gene3D von Willebrand factor, type A domain 126 310 IPR036465 -
Spst1g01856 869 FunFam Protein transport protein SEC23 53 112 - -
Spst1g01856 869 SUPERFAMILY vWA-like 406 497 IPR036465 -
Spst1g01856 869 SUPERFAMILY beta-sandwich domain of Sec23/24 8 624 - -
Spst1g01856 869 Gene3D - 502 611 - -
Spst1g01856 869 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 728 868 IPR036180 -
Spst1g01856 869 Gene3D - 53 111 - -
Spst1g01856 869 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 406 868 IPR037364 -
Spst1g01856 869 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst1g01856 869 Pfam Sec23/Sec24 helical domain 625 721 IPR006900 GO:0006886|GO:0006888|GO:0030127
Spst1g01856 869 Gene3D Sec23/Sec24 helical domain 622 866 - -
Spst1g01856 869 Pfam Sec23/Sec24 beta-sandwich domain 507 611 IPR012990 -
Spst1g01856 869 FunFam Protein transport protein SEC23 727 831 - -
Spst1g01856 869 SUPERFAMILY Zn-finger domain of Sec23/24 47 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst1g01856 869 SUPERFAMILY vWA-like 127 305 IPR036465 -
Spst1g01856 869 FunFam Protein transport protein SEC23 622 739 - -
Spst1g01856 869 Pfam Sec23/Sec24 trunk domain 407 496 IPR006896 GO:0006886|GO:0006888|GO:0030127
Spst1g01856 869 Pfam Sec23/Sec24 trunk domain 126 303 IPR006896 GO:0006886|GO:0006888|GO:0030127
Spst1g01856 869 Pfam Gelsolin repeat 737 825 IPR007123 -
Spst1g01856 869 Gene3D Severin 727 831 IPR029006 -
Spst1g01856 869 SUPERFAMILY Helical domain of Sec23/24 625 727 IPR036175 GO:0006886|GO:0006888|GO:0030127
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01856 Spst-Chr1 26714140 26720378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01856 K14006 - gmx:100789860 892.878