Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01853 ATGAAGAAAGAAAAAGAAAAAATGGTGAATGCTGTAACTCACAGTCTGAGAGTGTGTGTGCCCGTGTTGAAGTTGAACCCCAGTTGCAGAGGGAGCAAGAGCAGTAGCAACAGCGTCTTTCTGAAACCCTTTGCCAAATTCCCATCCCTCACCACTCAAATTCGCCACGCCTCTTTTCACCGATTACCATCATTCGCCGACACAGTTTCAGACTCAAAGCACACAACCCTTCTGGTTGAGACTTACCATCTCCATGACAGCTTCAGAGCCTTCATTGCAAAGCTTCAGAGGGAGGATTCGAACCCACTCCACATACTCGCCCAAGACGGAGATTGGTCCAAAGACCATTTCTGGGCTGCCGTCAGGTTCCTTCAAAATTCCTCAAGGTTCGCCGAAATACTTCAGGTAGGGACCCTCATAGCAGTGTTTAATTTCGTGTTTAATATGTGGAAGAACATTGAGAAGTCGCGGATTAGTGAGTTTAACTATAACAAGATCATAGGCTTGTTATGTGAAGATGGAATTATGGAAGATGCGTTATCTGCATTGCAAGAGATGAAAGTTCAAGGAATCAAGCCTTCTTTGGACACCTACAATCCAATAATTCACGGATTATCCGGAGCTGGTAAGTTCAGTGATGCTTTACGGTTTTTAGATGAGATGAAAAAATCTGGCTTAGAGCCAGATTCTGAAACCTATGATGGTTTGATTGGAGCCTATGGGAAATTTCAAATGTATGATGAGATGGGTGAATGTGTGAAAAAGATGGAGTTGGATGGATGTTCTCTTGATCATATAACTTATAATATACTTATCCAAGAGTATGCTCGTGGTGGGCTACTCCAGAGAATGGAAAAGCTATATCAAAGAATGCTTTCAAAAAGAATGCATTTGCAATATTCTACTTTTGTTGCAATGCTAAAGGCTTATACCACATTTGGTATTGTTGAAAAGATGGAAAAGTTTTACGGAAAAGTCTTGAACTCAAAAACATGTCTAGAGGATGATTTCATTAGAAAAATGGCTGAAGTTTATATTAAGAACTACATGTTTTCTAGATTAGAGGACCTGGCACTAGATTTATGTTCAGCATTTGGTGAGAGTGACCTTGTCTGGTGTCTCCGTCTTCTTTCTTATGCATGTCTTTTGAGTAAAAAAGGTATGCATATAGTTGTTCAAGAAATGCAAGATGCAAAGGTTAATTGGAATGTTTCTGTTGCAAATATCATCATGTTGTCTTATATGAAGATGAAAGATTTCAGGCATTTGAGAATTTTACTGTCTCAATTGCCAATCTATCGGGTGCGGCCTGATATTGTTACTATTGGAATTCTATTGGATGCCAATAGAATTGGTTTTGATGGTAGAGGAGCTTTAGAATCATGGAGAAGAATTGGCTATCTGGACAGAGTAGTAGAATTGAAAACAGATTCTCTGGTCTTTACTGCATTTGGTAAAGGTCATTTTCTTAAAAGCTGTGAAGAAGTGTACTCGTCCCTTCACCCTGATGACAGAGAAAGGAAAAAATGGAGTTACAATGATCTCATTGCTTTATTAAAAAAAAAAAAAAAAACATAA 1578 0.3891 MKKEKEKMVNAVTHSLRVCVPVLKLNPSCRGSKSSSNSVFLKPFAKFPSLTTQIRHASFHRLPSFADTVSDSKHTTLLVETYHLHDSFRAFIAKLQREDSNPLHILAQDGDWSKDHFWAAVRFLQNSSRFAEILQVGTLIAVFNFVFNMWKNIEKSRISEFNYNKIIGLLCEDGIMEDALSALQEMKVQGIKPSLDTYNPIIHGLSGAGKFSDALRFLDEMKKSGLEPDSETYDGLIGAYGKFQMYDEMGECVKKMELDGCSLDHITYNILIQEYARGGLLQRMEKLYQRMLSKRMHLQYSTFVAMLKAYTTFGIVEKMEKFYGKVLNSKTCLEDDFIRKMAEVYIKNYMFSRLEDLALDLCSAFGESDLVWCLRLLSYACLLSKKGMHIVVQEMQDAKVNWNVSVANIIMLSYMKMKDFRHLRILLSQLPIYRVRPDIVTIGILLDANRIGFDGRGALESWRRIGYLDRVVELKTDSLVFTAFGKGHFLKSCEEVYSSLHPDDRERKKWSYNDLIALLKKKKKT 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01853 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Spst1g01853 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Spst1g01853 525 Gene3D Tetratricopeptide repeat domain 240 356 IPR011990 GO:0005515
Spst1g01853 525 Pfam PPR repeat family 195 240 IPR002885 -
Spst1g01853 525 Gene3D Tetratricopeptide repeat domain 357 525 IPR011990 GO:0005515
Spst1g01853 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Spst1g01853 525 Gene3D Tetratricopeptide repeat domain 106 239 IPR011990 GO:0005515
Spst1g01853 525 PANTHER OS08G0520200 PROTEIN 49 524 - -
Spst1g01853 525 Pfam PPR repeat 163 191 IPR002885 -
Spst1g01853 525 Pfam PPR repeat 266 295 IPR002885 -
Spst1g01853 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Spst1g01853 525 NCBIfam pentatricopeptide repeat 232 264 IPR002885 -
Spst1g01853 525 NCBIfam pentatricopeptide repeat 197 230 IPR002885 -
Spst1g01853 525 NCBIfam pentatricopeptide repeat 163 194 IPR002885 -
Spst1g01853 525 NCBIfam pentatricopeptide repeat 266 295 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01853 149 465 Glycosyltransferase AT1G05670 21.118 9.17e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01853 - - gmx:100808924 819.69