Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01834 ATGAAGTGGGTGGGCAAGCCAAAGAAAAGGATGGAAGCCGTGAGTTCCTGGGGTAACACGCCGTTGGCCACGGTGGATCCTGAAATCCACGACCTCATTGAGAAGGAGAAGCGTCGTCAATGTCGGGGAATAGAGCTCATAGCGTCCGAGAACTTCACTTCCTTCGCCGTCATAGAGGCCTTGGGCAGCGCCCTCACCAACAAGTACTCCGAGGGTATGCCCGGCAACCGCTACTATGGCGGCAACGAGTTCATCGATCAGATTGAGAACCTCTGCCGTTCCCGCGCCCTCCAGGCCTTCCACCTCCTTCCCTCCCAATGGGGCGTCAACGTCCAACCCTACTCTGGTTCTCCAGCCAACTTCGCCGCCTACACCGCTGTGCTCCAGCCCCACGACCGCATCATGGGCCTCGATCTCCCCTCCGGCGGCCACCTCACCCACGGTTACTACACCTCCGGTGGGAAGAAGATCTCCGCCACCTCCATTTACTTCGAGAGTTTACCTTACAAGGTGAATTCGGCCACCGGATTCATCGACTACGACAGGTTGGAGGAGAAGGCCTTGGATTTCAGGCCCAAGTTGATAATTTGTGGTGGCAGTGCCTACCCGAGGGACTGGGACTATGCCAGGTTCAGACAGGTGGCCGACAAGTGCGGTGCTCTCTTGCTTTGCGACATGGCTCACATTAGTGGTCTTGTTGCTGCTCAGGAAGCTAATAATCCGTTTGAGTACTGTGATATTGTCACCACAACCACCCACAAGAGCTTGAGGGGTCCTAGGGCGGGTATGATCTTCTACCGGAAGGGACCTAAGCCGCCGAAGAAAGGGCAGCCTGAGAATGCAGTGTATGATTTTGAAGACAAAATAAACTTTGCTGTGTTCCCTTCCCTTCAGGGGGGTCCTCACAATCACCAGATTGGGGCACTTGCGGTGGCATTGAAACAGGCCATGACCCCGGGATTCAAGGTATATGCGAAGCAGGTTAAGGCCAACGCAGCTGCACTTGGAAATTTCTTGATGAGCAAGGGATACAGTCTTGTCACCGGAGGAACTGAGAACCATCTTGTCTTGTGGGATCTCCGCCCTCTTGGCTTGACCGGCAATAAGGTGGAGAAACTTTGTGACCTCTGCAACATTACTGTCAACAAAAATGCCGTTTTTGGTGATAGCAGTGCATTGGCCCCTGGAGGAGTACGGATTGGTGCTCCGGCCATGACTTCGAGGGGCTTGGTTGAGAAGGACTTTGAGCAGATCGGAGAGTTCCTTCATCGTGCAGTGACTCTGACACTGGAGATCCAGAAGGAGCATGGCAAGCTTTTGAAGGATTTCAACAAGGGCCTGGTGAACAATAAGGCTATTGAAGATCTCAAAGTTGATGTTGAGAAATTTTCAGGCTCCTTCGATATGCCTGGCTTCCTCGTATCTGAGTTGAAGTACAAGGACTAG 1446 0.5318 MKWVGKPKKRMEAVSSWGNTPLATVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALQAFHLLPSQWGVNVQPYSGSPANFAAYTAVLQPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSATGFIDYDRLEEKALDFRPKLIICGGSAYPRDWDYARFRQVADKCGALLLCDMAHISGLVAAQEANNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMTPGFKVYAKQVKANAAALGNFLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLHRAVTLTLEIQKEHGKLLKDFNKGLVNNKAIEDLKVDVEKFSGSFDMPGFLVSELKYKD 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01834 481 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 246 262 IPR019798 GO:0030170
Spst1g01834 481 Gene3D Aspartate Aminotransferase, domain 1 26 470 IPR015422 GO:0003824
Spst1g01834 481 FunFam Serine hydroxymethyltransferase 314 470 - -
Spst1g01834 481 CDD SHMT 23 434 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Spst1g01834 481 Hamap Serine hydroxymethyltransferase [glyA]. 21 471 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Spst1g01834 481 Pfam Serine hydroxymethyltransferase 23 421 IPR039429 -
Spst1g01834 481 SUPERFAMILY PLP-dependent transferases 13 473 IPR015424 -
Spst1g01834 481 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 15 473 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Spst1g01834 481 PIRSF SHMT 5 476 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Spst1g01834 481 FunFam Serine hydroxymethyltransferase 51 326 - -
Spst1g01834 481 Gene3D - 51 326 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01834 Spst-Chr1 26545233 26547270 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01834 K00600 - gmx:100815417 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01834 1 26545233 26547270 Spst1g01834 1 26545233 26547270 ECH