Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01826 ATGAGTACTGTTGATAAGATGTTGATCAAGGGAATCCGGAGTTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAAGCCCTTAACCCTAATCGTTGGTCCCAACGGTGCTGGCAAGACCACCATCATTGAGTGCTTGAAGCTTTCCTGCACCGGCGAGTTGCCTCCCAACGCCAGGTCTGGTCACAGCTTCATTCACGACCCCAAGATAAAGCTCCGATTCAAGACGGCCGCCGGTAAAGATGCCGTCTGTGTGAGGTCCTTTCAGCTTACGCAGAAGGCATCCAAAATGGAATACAAGGCTATCGAGAGTGTGCTTCAAACCATCAATCCTCACACGGGAGAGAAAGTTTGCCCCAGCAATCGATGCGCTGACATGGATCGAGAGATTCCTGCCCTCATGGGTGTTTCCAAGGCCATTCTCGAAAATGTTATATTCGTTCACCAGGACGAAGCTAACTGGCCCCTACAGGATCCTTCCACCTTAAAGAAGAAGTTTGACGATATATTTTCCGCAACTCGATACACCAAGGCGTTGGAAGTTATAAAGAAACTTCATAAGGAGCAGGCTCAAGAGATAAAGACTTACAAGCTCAAACTCGAACATCTTCAAACTCTCAAAGATGCTGCTTATAAGCTACGGGAAAGCATTGCACAGGATCAAGAGAAAACAGAGTCAGTGAAAGGTCAAGTACAGCAGTTGGAAGAGAGCATTAAACAATTAGAGGATAAAATTCATCATGCAGAGGAAACATTGAAGGATTTGCGGAAGCTGCAAGAGCAGATATCAACTAAAACTGCTCAACGAAGCACCCTGCTTAAGGAACAAGAGAAACAACATGCAGCTCTTGTGGAGGAGAATGTAGATTCTGATGAATTATTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAATTTTAGAAGCGAAAATAAGAAAGTTGGAAAGAGAAATGACCGACCTTGCTGAGAAAGGTACCGCCCTCATGAATATCATTGGTCAATCCAACAAAGAGATTGCCAAACTACAAGCTGAAGCAGAAGCCCACATGTCTTTGAAGAATGACCGTGATTCCTCCATTCACAGTCTTTTTGCCACATATAGTTTGGGACCACTTCCAAGGTCGCCTTTCAGTGTCGAGGTTGCTTTAAATCTCACTAGTCGTGTAAAATCCAGGTTGGCAGATCTCGAGAAGGATCTGGATGATAAAAAGAAAGTAAATGACAACGAACTTGAGATGGCATGGGATCGCAACATGAATGCTAATGACTGTTGGAAAGATACTGATGCTAAAATAAAGGCTATGCAAGGGATCAAGGATGGCATTTTTAAGTGCATCGAAGAGAAGAAAAATGAGCTCGATTCATTTGAACTTCAAATGACGAATCTGAATTTCTCTCACATAGATGAAAGAGAAAAAAATTTGAGAAATGAGATTGAGAGGAAGGAAAGCCAACTCTCTCAAAGACAATTTGAACCAAATATACGTCAAGTGCAAAATGAGATATATAGTATAGATCAAAAGATTAGAGCTGTCAATCGTGAGAAGGATATCATGGCTTCTGATTCAGAGGACAGAGTTATGCTATCTCACAAGAAAGCAGAGTTGGAAAATCGGAAGAAGAAACATAAAAAGATATTTGATGACCAAAAGGACAAAATTAGAAAGGTGCTAAAAGGGAGGGTTCCTCTTGATAAGGATGTGAAAAAAGAAATTACACAAGCATTAAGGGCTGTTGGAGCTGAATTTGATGATCTGAATGCAAAGTACCGTGATGCTGAGAAGGAAGTCAATATGTTGCAAATAAAAATACAAGAAGTTAATGGTAACCTATCCAGACACCACAAGGATTTGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCAGCAATGTTCTGGACTTGATTCTTATCTCAAGGTTTTAGAGTCTTCCAAGGAGAAAAGAGATGTCCAGAGAAGCAAATATAATATTGCTGATGGTATGCGCCAAATGTTTGATCCTTTTGAAAGGGTTGCTAGAGGTCATCATGTTTGCCCTTGCTGTGAGCGCCCTTTCTCTCCGGAAGAAGAAGACAATTTTGTCAAGAAGCAAAGAGTGAAGGCAGCCAGTTCAGCTGAACATATGAAAGTTCTTGCTGTGGAATCCTCAAATGCAGAGTCTCATTATCAGCAGCTGGACAAGCTTCGGATGGTTTATGAAGAATATGTTAAACTTGGCAAGGAGATCATCCCTAATACTGAAAAGGAACTTCAGCAACTTAAAGATGAGATGGAAGACAAATCTCAGGCTCTTGATGATGTTTTAGGTGTTTTAGCTCAAGTAAAGACTGACAAGGATTTGGTTGACACATTGGTGCAACCTGTTGAAAATGCTGATCGACTTTTCCAAGAAATTCAAGATTTGCAAAGGCAAGTTGAGGATTTAGAAGATAAGCTTGATTTTCGAGGACAGGGAGTGAGGACTCTGGAAGAGATTCAGTTGGAGCTTAACACACTGCAGAGCACTAAGGACAATTTGCAATCTGAATTGGAGAGGTTGAGGGAAGAACAGAGGCATATGGAGAATGATCTATCAAATATTCGAATACGGTGGCATAATCTAACGAAGGAGAAAATGAAAGCAACTAACATATTGGAAGGTGTCAAAAGATTAGAAGAAGAATTGGAGCGTTTAACTGAAGAAAAGACCCAAGTTGATCTCGATGAGAAGCATTTGGCAGATGCTCTTGAACCTTTTTCCAAGGAGAAAGATAAATTACTGGCTAACTATAATGAACTGAAAATTAGACTCAGCCGTGAGTTTGAGGACCAGGCTGAACAAAAGAGAAGTTATCAGCAAGAAGCTGAATCACTTTTCAGAATGAATTCTAAGATCAAAGAGTATTCTGATTTAAAGAAAGGAGACAGGTTGAAGGAACTGCAGGAAAAGAATTCTCTATCACAGTTTCAACTTCAAAGTTGTGATACCAGGAAACAGGAAATTTTAGCTGAGCTAGTCAAAAGCAAAGATTTAATGCAAAATCAAGATCAGTTAAGAAGAAAAATTGATGACAACTTAAATTATAGGAAAACAAAGGCTGAAGTAGATGAGCTGGCACATGAAATTGAAACACTGGAAGAAAATATATTGAAGGCTGGTGGGATCTCCACAATTGAAACTGAACGCCAGAAACTATCGCAGGAGAGGGAGAGACTTCTTTCAGAGGTAAACAGAAGCCGTGGAACAATGTCTGTTTACCAAAACAATATTTCCAAAAATAAGGTTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGCGATACTTTGACCAGCTTATCCAGCTTAAGACAACTGAAATGGCCAACAAGGATCTGGACAGATACTACAATGCACTTGACAAGGCATTGATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATTAGGGAATTGTGGCAGCAAACTTATAGAGGGCAAGATATCGACTACATTAGTATTCATTCAGACTCAGAAGGTGCAGGGACCCGTTCATACAGTTACAAGGTTCTCATGCAGACTGGTGATGCAGAGTTGGAGATGAGAGGAAGATGTAGCGCAGGTCAGAAGGTTCTGGCATCTCTTATCATACGGTTGGCACTAGCTGAAACGTTTTGTCTCAATTGTGGAATTCTTGCACTGGATGAACCTACCACAAATTTGGATGGACCAAATGCTGAAAGTCTGGCTGCAGCTCTCGTAAGGATCATGGAGGACAGGAAAGGGCAGGAAAATTTTCAACTAATTGTAATCACTCACGATGAGCGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCAGAGAGATATTATCGTGTCGCCAAAGATGACCTCTGTGATGCCCACGAAACGACTGTTCCAATGATGGATATGACCTTGGATTTTGTCATCCCTGTACAGGTTAGGTTGTCTGACAAGAATGTGTTTTCAAGAAATGTGAGTGAAGGAAGAAAAATTATGACACTCAATATGAAGTCCCTGAAAATAGTTTAG 4041 0.4086 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKIKLRFKTAAGKDAVCVRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCPSNRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLEHLQTLKDAAYKLRESIAQDQEKTESVKGQVQQLEESIKQLEDKIHHAEETLKDLRKLQEQISTKTAQRSTLLKEQEKQHAALVEENVDSDELLMEWKTKFEERIAILEAKIRKLEREMTDLAEKGTALMNIIGQSNKEIAKLQAEAEAHMSLKNDRDSSIHSLFATYSLGPLPRSPFSVEVALNLTSRVKSRLADLEKDLDDKKKVNDNELEMAWDRNMNANDCWKDTDAKIKAMQGIKDGIFKCIEEKKNELDSFELQMTNLNFSHIDEREKNLRNEIERKESQLSQRQFEPNIRQVQNEIYSIDQKIRAVNREKDIMASDSEDRVMLSHKKAELENRKKKHKKIFDDQKDKIRKVLKGRVPLDKDVKKEITQALRAVGAEFDDLNAKYRDAEKEVNMLQIKIQEVNGNLSRHHKDLESRKRFIESKLQSLDQQCSGLDSYLKVLESSKEKRDVQRSKYNIADGMRQMFDPFERVARGHHVCPCCERPFSPEEEDNFVKKQRVKAASSAEHMKVLAVESSNAESHYQQLDKLRMVYEEYVKLGKEIIPNTEKELQQLKDEMEDKSQALDDVLGVLAQVKTDKDLVDTLVQPVENADRLFQEIQDLQRQVEDLEDKLDFRGQGVRTLEEIQLELNTLQSTKDNLQSELERLREEQRHMENDLSNIRIRWHNLTKEKMKATNILEGVKRLEEELERLTEEKTQVDLDEKHLADALEPFSKEKDKLLANYNELKIRLSREFEDQAEQKRSYQQEAESLFRMNSKIKEYSDLKKGDRLKELQEKNSLSQFQLQSCDTRKQEILAELVKSKDLMQNQDQLRRKIDDNLNYRKTKAEVDELAHEIETLEENILKAGGISTIETERQKLSQERERLLSEVNRSRGTMSVYQNNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDLCDAHETTVPMMDMTLDFVIPVQVRLSDKNVFSRNVSEGRKIMTLNMKSLKIV 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01826 1346 Coils Coil 617 637 - -
Spst1g01826 1346 Gene3D - 1050 1302 IPR027417 -
Spst1g01826 1346 Coils Coil 1028 1048 - -
Spst1g01826 1346 Coils Coil 829 870 - -
Spst1g01826 1346 FunFam DNA repair protein RAD50 3 290 - -
Spst1g01826 1346 Coils Coil 798 818 - -
Spst1g01826 1346 SUPERFAMILY Rad50 coiled-coil Zn hook 651 734 - -
Spst1g01826 1346 Coils Coil 395 415 - -
Spst1g01826 1346 FunFam DNA repair protein RAD50 1137 1296 - -
Spst1g01826 1346 Coils Coil 187 207 - -
Spst1g01826 1346 Coils Coil 448 494 - -
Spst1g01826 1346 Coils Coil 927 954 - -
Spst1g01826 1346 Coils Coil 750 777 - -
Spst1g01826 1346 Coils Coil 497 517 - -
Spst1g01826 1346 Coils Coil 218 276 - -
Spst1g01826 1346 ProSiteProfiles Rad50 zinc-hook domain profile. 638 737 IPR013134 -
Spst1g01826 1346 Coils Coil 1055 1082 - -
Spst1g01826 1346 Coils Coil 299 326 - -
Spst1g01826 1346 NCBIfam rad50 3 1292 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Spst1g01826 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1276 IPR027417 -
Spst1g01826 1346 Pfam AAA domain 7 246 IPR038729 GO:0006302|GO:0016887
Spst1g01826 1346 Gene3D - 4 282 IPR027417 -
Spst1g01826 1346 Coils Coil 535 555 - -
Spst1g01826 1346 Coils Coil 578 612 - -
Spst1g01826 1346 PANTHER RAD50 1 1297 - -
Spst1g01826 1346 Pfam Rad50 zinc hook motif 682 714 IPR013134 -
Spst1g01826 1346 Coils Coil 881 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01826 Spst-Chr1 26487195 26498404 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01826 K10866 - gmx:100818545 2127.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01826 1 26487195 26498404 Spst1g01826 1 26487195 26498404 ECH