Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01824 ATGATGGATCGAATGGGTTGTGCAGCAGACACGAGCAAGAGCATAAAGCTGGAGAGGTACAACAGCTACATAAGGAGAGTCAACAGCACCAAGCTCCTTAACGCCTCCTCCAAGCTCCTCTTCCGGGCCACCCTCCTCGTCGCACTCATCCTCGTCTTCATATTCACCTTCAACTACCCTCCCCTCGCCGACACCACCCACCGCCATCTCCACGCCCACTCCCACTTCCTCTCCTCCGCATTCGGCGCCTGGGAGAAGCAGGTCCGCCATTCCTCCACCCCCCGACGCCCCAATGGCCTCACCGTCCTCGTCACCGGCGCCGCTGGCTTCGTCGGCACCCACTGCTCCCTCGCCCTGAAAAAGCGCGGCGATGGCGTCCTGGGCCTTGACAATTTCAACTCCTACTACGACCCCTCCCTGAAGCGCGCCCGCCAAGCAATGCTGAGCAAGCACCAGGTCTTCATCGTGGAAGGCGACCTCAACGACAAGCCCTTGCTGGAGAAGCTCTTCGACGTGGTGGCCTTCACCCACATCCTCCACCTGGCCGCCCAGGCCGGCGTCCGCTACGCCATGCAGAACCCCCAATCCTACGTCACCGCCAACATTGCGGGCTTCGTCAACCTTCTCGAAGTTGCCAAATCCGCCAACCCCCAACCCTCCATCGTGTGGGCTTCCTCCAGCTCCGTTTACGGCCTCAACACCGAGAACCCCTTTTCGGAACTCCACCGGACGGACCAACCGGCCAGCCTCTACGCCGCGACGAAGAAAGCCGGGGAGGAAATCGCGCACACCTACAACCACATTTACGGTCTCTCCCTGACCGGACTCCGGTTCTTCACCGTGTACGGGCCGTGGGGGAGACCCGACATGGCTTACTTTTTCTTCACGAAGGACATCCTCCAGGGGAAGAGCATCGACGTGTACGAGACGCAGGATGGGAAGCAGGTGGCGCGTGACTTCACGTACATCGACGACATCGTGAAGGGTTGCCTCGGGGCTCTGGACACGGCGGAGAAGAGCACCGGGAGCGGGGGGAAGAAGCGTGGGCCAGCCCAGTTGAGGGTTTACAATCTGGGCAACACCTCTCCCGTCCCCGTGGGGAGGTTGGTCTCCATTCTGGAAGGGTTGCTGAACACGAAGGCCAAAAAGCACGTCATCAAGATGCCCTCAAACGGTGACGTTCCCTACACCCACGCGAATGTGAGCTTGGCCTTCAGAGATTTCGCTTACAAACCCACCACCGATCTCCCCACCGGTCTCAGGAAGTTCGTCAAGTGGTATGTCGGTTATTACGGCCTCCAACAAAGGGTCAAAAGGGAAACTCGTCTTGACAATTGA 1338 0.5957 MMDRMGCAADTSKSIKLERYNSYIRRVNSTKLLNASSKLLFRATLLVALILVFIFTFNYPPLADTTHRHLHAHSHFLSSAFGAWEKQVRHSSTPRRPNGLTVLVTGAAGFVGTHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQAMLSKHQVFIVEGDLNDKPLLEKLFDVVAFTHILHLAAQAGVRYAMQNPQSYVTANIAGFVNLLEVAKSANPQPSIVWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILQGKSIDVYETQDGKQVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILEGLLNTKAKKHVIKMPSNGDVPYTHANVSLAFRDFAYKPTTDLPTGLRKFVKWYVGYYGLQQRVKRETRLDN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01824 445 Gene3D - 103 414 - -
Spst1g01824 445 Pfam NAD dependent epimerase/dehydratase family 102 339 IPR001509 -
Spst1g01824 445 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 94 434 IPR036291 -
Spst1g01824 445 PANTHER EPIMERASE-RELATED 84 434 - -
Spst1g01824 445 FunFam UDP-glucuronate 4-epimerase 3 101 432 - -
Spst1g01824 445 Gene3D - 279 427 - -
Spst1g01824 445 PRINTS Nucleotide sugar epimerase signature 353 368 - -
Spst1g01824 445 PRINTS Nucleotide sugar epimerase signature 318 333 - -
Spst1g01824 445 PRINTS Nucleotide sugar epimerase signature 128 144 - -
Spst1g01824 445 PRINTS Nucleotide sugar epimerase signature 393 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01824 Spst-Chr1 26467692 26469029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01824 5 441 Miscellaneous Gene Families AT3G23820 80.973 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01824 K08679 - gmx:100786653 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01824 1 26467692 26469029 Spst1g01824 1 26467692 26469029 ECH