Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01818 ATGATGATGAAGAAGAAGAAACAGGTACCGGAGTGGATGAACAGTTCTCTGTGGTCCACCCCTTCCGACCACCATCGCTTTAACCCTCCCTCTCCTCCCTCTCCTCCTCCTCCCCCTCCTCCGCCCCCCTCCGTCTCTGTCAGAGATGATCCCCCAACTAATCACAATGCCTCTCCTTCTTCTTCATCCGTCGTCTCGTCTGCTTCTGCATTCTCCGCCGCCGATGATATCTCTTCTCAGGCTCAGTTGTTGACCGAGTTATCTAGGAAGGTGATAGACATGCGCGAGCTGAGGAGAGTGGCTTCTCAAGGCATACCTCATGCTGCCGCCCCTGCTTTACGTCCTACGCTCTGGAAGCTCTTGCTTGGATATCTTCCGTCCGATCGTTCCCTTTGGTCCTCTGAATTAGCCAAGAAGAGGTCCCAGTACAAACATTTCAAAGACGACCTCCTCATGAATCCTTCAGAAATCACGAGGAGGATCTACAACTCTGCTACTCATGACATCGATGATGCAAAATCTGAAACTCGTATCTTGCTTTCTAGATCACAGATCACTCATGAGGACCACCCTTTGAGTCTTGGCAAGACCAGCATATGGAATCAGTTCTTCCAGGACACAGAGCTCATAGAGCAGATTGACCGTGATGTCAAACGTACTCATCCAGATATACACTTCTTCTCCGGTGATTCTCAATTGGCAAAATCTAATCAGGATGCTTTAAAGAACATATTAATAATTTCTGCAAAGTTGAACCCAGGTACAAGATATGTTCAAGGGATGAATGAAGTATTAGCTCCTCTATTCTATGTGTTCAAAAATGACCCTGATGAGGAAAATGCAGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTATTGAGTGGGTTCCAAGATAATTTTTGTCAACAGCTTGATAATAGTATTGTTGGAATCCGTTCCACTATTACAAGATTGTCCCAGCTATTAAAGGAACACGATGAAGAACTGTGGCGTCATCTTGAGATCACTACTCAGGTCAATCCCCAATTCTATGCATTTAGGTGGATTACTCTCCTCTTGACCCAGGAATTTAAATTTTCTGACATCCTTCATATTTGGGACATCATTTTAAGTGATCCAGAGGGTCCACAGGAGACACTTCTCAGAATATGCTGTGCAATGCTAATTCTCGTCCGTAGGCGCCTCCTGGCGGGTGATTTCACTTCTAACCTGAAGTTGCTGCAAAGTTATCCCTCTACAAACATTAGTCATTTGCTCCATGTGGCAAATAAGTTACGTGTACAGTCAGGCTAA 1302 0.4524 MMMKKKKQVPEWMNSSLWSTPSDHHRFNPPSPPSPPPPPPPPPSVSVRDDPPTNHNASPSSSSVVSSASAFSAADDISSQAQLLTELSRKVIDMRELRRVASQGIPHAAAPALRPTLWKLLLGYLPSDRSLWSSELAKKRSQYKHFKDDLLMNPSEITRRIYNSATHDIDDAKSETRILLSRSQITHEDHPLSLGKTSIWNQFFQDTELIEQIDRDVKRTHPDIHFFSGDSQLAKSNQDALKNILIISAKLNPGTRYVQGMNEVLAPLFYVFKNDPDEENAAFAEADTFFCFVELLSGFQDNFCQQLDNSIVGIRSTITRLSQLLKEHDEELWRHLEITTQVNPQFYAFRWITLLLTQEFKFSDILHIWDIILSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQSG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01818 433 SMART tbc_4 101 402 IPR000195 -
Spst1g01818 433 MobiDBLite consensus disorder prediction 49 63 - -
Spst1g01818 433 MobiDBLite consensus disorder prediction 26 48 - -
Spst1g01818 433 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 62 411 - -
Spst1g01818 433 FunFam TBC1 domain family member 13 311 432 - -
Spst1g01818 433 FunFam TBC1 domain family member 13 193 304 - -
Spst1g01818 433 Pfam Rab-GTPase-TBC domain 112 397 IPR000195 -
Spst1g01818 433 SUPERFAMILY Formin homology 2 domain (FH2 domain) 33 43 - -
Spst1g01818 433 MobiDBLite consensus disorder prediction 1 63 - -
Spst1g01818 433 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 313 430 IPR035969 -
Spst1g01818 433 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 86 335 IPR035969 -
Spst1g01818 433 Gene3D - 312 432 - -
Spst1g01818 433 ProSiteProfiles TBC/rab GAP domain profile. 108 376 IPR000195 -
Spst1g01818 433 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 195 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01818 Spst-Chr1 26369690 26374701 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01818 K24796 - gmx:100778830 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01818 1 26369690 26374701 Spst1g01818 1 26369690 26374701 ECH