Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01817 ATGGACCTGGTGGAATTGGAGGCAGTGGAAGGGCTCCGATGGACGTGGAATTCGTGGGTGGCGGAAGGGACGAATCTGGTGATACCTCTGAGCATAATGTGCAGTCCCATGATGTTGAGTGAGGTCCCTCTTCTCCCATACAATCCTCTCCTCTGCTCCCGATGCGCCGCCGTTTTAAACCCCTACGCACGCCTCGACTACCAGTCCCGCATCTGGCACTGCCCCTTCTGCTCCCTCCGCAACCCCTTTCCTCGCCCCATCGCCGACACCAACCTCCCTGCAGAGCTCTTCCCCACCTACAGCACCGTCGAGTACTCTCCTCCTCTCCCTCCCTCCTCTCCCTCTCCTTCTCCCCCTGCCTTCGTCTTTCTCCTCGATATCTCCTCCCCCCAAGACCAACTCCTCTCCCTCAAGAACGACCTCCTCCTCCTCCTCCACCACCTCCCCGACCACGCCCTCGTCGCTCTCCTCACCTTCGACTCCATGGTCTATCTCCACCATCTCGCCTCTCCCCACTGTTCCTCGCTCCACCTCTTTCACGGCAACCGCAATCTCTCCTCCAATCAGATCCGACAGTTCCTCAACATTGGCCGCCCCCACCCGCTGCATCATGGACAGACGCCCAAACAGGGTTTTCTGTTGCCAATTTCCGAATGTGAATTCTCCATCACTGCTGCAATTGAAGACATCCATTCTACATTCGTCTTCACTTCCGGCACTCGCCCTCCAAGGTGCACCGGGGCTGCCATTTCCGTTGCCCTCGGACTTCTAGAGTCCTGCCTCGTCACCACAGGCTCCAGGATCATGCTCTTCACCTCCGGACCTGCTACTCTCGGACCCGGAATCGTTGTTGATCCTGATCTCCGCCATCCCATCAGAACCCACCATCACATCTTCAATTCCCAAGCCAGACACCACGCTAGCTCTTGCGCTTTCTATAACCAACTCTCCCAGAGGTTATCTGACGCCTCTGTTGTTCTTGATCTCTTTGCTTGTTCGCTCGATCAAGTTGGGGCCGCCGAGTTACGAGAACCGGTTGAGCAATCTGGTGGATTGATGATTCTCTGCGAATCCTTCGAATCTGATCAGTTCAAGAAATGTCTCAGGCATATGTTCAAGTCTGACGAGCAGGGCCATTTGAAGATGAACTTTGATGCCACTATTGAAATAGTGACTACCAAAGATGTCAAAATCTGTGGAGCACTTGGCCCTTGTGTGTCTCTTCACAGAAAGAACAGTTTGGTGAGTGAGGCTGAGGTTGGACAGGGTGGTACCTCTATGTGGAAGTTAAACACGCTCACCCACAAAACTTGCATTGCTTTTTTCTTCCAAGTGAATCAGCAGCAGAAAATTCAACCCGGGTCTGCATTTTTGATTCAGTTTATCACGCGGTACAGGCAGGGGAACATGGGATACCAGAAAAGAGTGACCACTGCTGCAAGACGATGGGTTGCCAACCATTCTGCTGATATTGCTGCTGGGTTTGATCAAGAAGCCGCCGCTGCAGTTATGGCAAGACTTGCAATTCTCCGTGCACAGTCATGCCATGCCCGTGATGTAATTAGATGGCTGGATGACGCGCTCATACGTTTTACTTCCAAGTTTGGGGACTATGTGCCAGAAGATCCATCTTCCTTCCGCCTATCCTCCAACTTTTCCCTTTATCCCCAGTTTATGTTCCACTTGAGGCGATCTCAATTTATTGATGTCTGTAACACTACTCCTGATGAAACTGCGTTTTTCCGGCTCATGCTGAACCGCGAGGGAGTAGTAGGATCACTTATAATGATTCAACCTACGCTTTTCCAATATTCGTTCGACGGGCCACCTGTTCCAGTACTGCTAGATATTCGTTCTGTTTCTCCTGATTTTATCTTGCTCTTTGATTCTTTCTTCTATGTGGTCATTCATTATGGGTCCAAGATAGCCCAATGGAGGAAGCTGGGTTATGATAAGGACCCCAATCATGAGAACTTCAGAAAGCTGTTGGAAGCCCCAGAACTGGATGCAGAGCAACTGGTGGCGGACAGGGTTCCAGTGCCGAGGATTATTAGATGTGACCAACATAGCAGTCAGGCTAGATTTCTTCTCGCCAAGTTGAACCCATCTGTTACTCAAAATTCAACCTACACAGATGGATCGGATATTATATTTACTGATGACATGAGCTTGGAAGTTTTTCTAGATCAGTTGCAGGTACTGGCAGTGCAAAGCTAG 2217 0.5088 MDLVELEAVEGLRWTWNSWVAEGTNLVIPLSIMCSPMMLSEVPLLPYNPLLCSRCAAVLNPYARLDYQSRIWHCPFCSLRNPFPRPIADTNLPAELFPTYSTVEYSPPLPPSSPSPSPPAFVFLLDISSPQDQLLSLKNDLLLLLHHLPDHALVALLTFDSMVYLHHLASPHCSSLHLFHGNRNLSSNQIRQFLNIGRPHPLHHGQTPKQGFLLPISECEFSITAAIEDIHSTFVFTSGTRPPRCTGAAISVALGLLESCLVTTGSRIMLFTSGPATLGPGIVVDPDLRHPIRTHHHIFNSQARHHASSCAFYNQLSQRLSDASVVLDLFACSLDQVGAAELREPVEQSGGLMILCESFESDQFKKCLRHMFKSDEQGHLKMNFDATIEIVTTKDVKICGALGPCVSLHRKNSLVSEAEVGQGGTSMWKLNTLTHKTCIAFFFQVNQQQKIQPGSAFLIQFITRYRQGNMGYQKRVTTAARRWVANHSADIAAGFDQEAAAAVMARLAILRAQSCHARDVIRWLDDALIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVCNTTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSVSPDFILLFDSFFYVVIHYGSKIAQWRKLGYDKDPNHENFRKLLEAPELDAEQLVADRVPVPRIIRCDQHSSQARFLLAKLNPSVTQNSTYTDGSDIIFTDDMSLEVFLDQLQVLAVQS 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01817 738 CDD Sec23_C 588 708 IPR037550 GO:0030127|GO:0090114
Spst1g01817 738 FunFam Protein transport protein SEC23 381 481 - -
Spst1g01817 738 Pfam Sec23/Sec24 trunk domain 116 370 IPR006896 GO:0006886|GO:0006888|GO:0030127
Spst1g01817 738 Gene3D Sec23/Sec24 helical domain 493 735 - -
Spst1g01817 738 FunFam Protein transport protein SEC23 46 102 - -
Spst1g01817 738 Pfam Sec23/Sec24 beta-sandwich domain 384 484 IPR012990 -
Spst1g01817 738 Gene3D Severin 598 702 IPR029006 -
Spst1g01817 738 Pfam Gelsolin repeat 610 696 IPR007123 -
Spst1g01817 738 Gene3D - 46 102 - -
Spst1g01817 738 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 4 737 IPR037364 -
Spst1g01817 738 Pfam Sec23/Sec24 helical domain 496 592 IPR006900 GO:0006886|GO:0006888|GO:0030127
Spst1g01817 738 Pfam Sec23/Sec24 zinc finger 49 85 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst1g01817 738 Gene3D von Willebrand factor, type A domain 118 382 IPR036465 -
Spst1g01817 738 SUPERFAMILY Helical domain of Sec23/24 496 598 IPR036175 GO:0006886|GO:0006888|GO:0030127
Spst1g01817 738 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 599 737 IPR036180 -
Spst1g01817 738 SUPERFAMILY Zn-finger domain of Sec23/24 42 108 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Spst1g01817 738 FunFam Protein transport protein SEC23 598 702 - -
Spst1g01817 738 FunFam Protein transport protein SEC23 118 382 - -
Spst1g01817 738 SUPERFAMILY vWA-like 118 373 IPR036465 -
Spst1g01817 738 SUPERFAMILY beta-sandwich domain of Sec23/24 3 495 - -
Spst1g01817 738 Gene3D - 6 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01817 Spst-Chr1 26364972 26367286 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01817 K14006 - gmx:100784000 1226.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01817 1 26364972 26367286 Spst1g01817 1 26364972 26367286 ECH