Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01811 ATGAACCGATTGACAGTCCATGACACTGCGCTCCGATTTGGGTTGGCAGAAGCGTGGGAGAGAAAGACAAAAGAGAAGGTGTCTGAAGAAAGAGAGGGGGTATTGGGTATATCTGAAGAAGTGAAGACCTTGGTAGTGAAAGAGGCCAGAGAACCGATTGAAAAGGGTAGTGAGAGGGGATTAGTTGCAAAAGTTGGGGTTGAGAAGATCGCGGCGGTGTATATGGATATGGGTGCTACTGCTACAAAACTTGAAAGTGATTGGGGGTGCTTTGATTTCAAGAAAGATCGTATCTGTTACCAAGTCTTGCTAGTTGGCAATGGCATAAGCCATTTAAGTGTGGCCACCGCCGCCGCCACCGCCACTTTTGCTATGGCTAAAGATGTGTGGAGCCGAACATGTGGATCTGCATCTGCATCTTCCTCTCCCATTCCCAGGGAACGTGGCAATAGAAGGCAACAGCAAGGTACTTACTTGGACCGCAGCGTGGACATGGAAGAGCTATTAGCGGCAATGGGGGAGACCCAGAACGAGGATGAACTGTTTGCGGTGATGTCCCCCTACAGCGGGAGGCAGCTGTCTATGCGCTTCATGGTTTCCCTTCTCTCCCGCGAGCCCGATTGGCAACGCACCCTTGCCCTTCTTGATTGGATAAACGAAAAGGCTCTCTATTCCCCCTCCCTCTTCGCCTACAACGTCGTCCTCCGCAACGTCCTTCGGGCCAAGCAGTGGCACCTCGCCCACGGCCTGTTCGATGAAATGCGCCACAAGGGCCTTTCCCCCGATAGGTACACCTACTCCACCCTCATTACTTCTTTCGCCAAACACGGCTTGTTTGATTCTTCTCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTTTCCGGTGACCTTGTTCTCTACAGTAATTTGATTGACCTTGCCCGCAAGTTGTGCGATTACTCCAAGGCCATTTCCATCTTCACCAGATTGAAAGCCTCCACCATTACCCCCGACCTCATTGCCTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGCGAGGCTCGCCTTCTTCTCCAAGAGATGGCTGACAATGCCGTTCAACCCGACACCGTCAGCTATTCCACGCTTCTTGCAATCTACGTTGAGAATCAAAAGTTTGTTGAAGCGCTTTCTCTATTCTCTGAAATGAATGAAGCCAAATGCCCCCTTGATCTCACCACCTGTAACATCATGATTGATGTTTATGGCCAGCTTCATATGCCTAAGGAAGCCGATCGCCTCTTCTGGAGCATGAGGAAAATGGGGATTCAGCCCAATGTGGTTAGCTACAATACGCTCTTGAGGGTTTATGGAGAGGCTGAGCTATTTGGGGAAGCCATCCATCTGTTTCGTTTGATGCAGAGTAAGGATGTTCCGCAGAATGTCGTCACCTACAACACTATGATTAATATCTATGGCAAGACCCTTGAGCACGAGAAGGCTACCAATCTCATTCAAGAAATGAAGAAAAAGGGTATTGAACCCAATGCCATCACTTATTCAACCATAATATCCATTTGGGAGAAGGCAGGCAAACTGGACCGGGCAGCTATCTTGTTTCAAAAATTAAGGAGTTCAGGAGTTCGAATTGACGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGGCAGGTTTAGTTGCTCATGCCAAGCGTCTGCTGCATGAGCTCAAGCGACCAGACAACATTCCCAGGGAGACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTCCGGCAGGCTTTTGATGCTGGCGAGGTCAAAGATATTTCTGTGTTTGGGTGCATGATTAATCTTTTCTCAAAGAACAAAAAGTATGGCAATGTAGTTGAAGTGTTTGAGAAGATGAGACAGGTGGAATATTTTCCTGATTCTGATGTTATTGCTGTTGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCAGATGCTTTATATAGACAGATGCATGAAGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAAGATTTCAAGATGGTAGAGTCATTGTTTGAGAAGCTGGATTCCAATCCTAATATCAATAAGAAGGAGTTGCATCTTGTTGCTGCTAGCATTTATGAGCGAGCAGATAGACTTAACGATGCTTCCCGAGTCATGAATAGGATGAATCAAAAAGCAATCAGAAGTCACGATTATACTCAGTAA 2259 0.4683 MNRLTVHDTALRFGLAEAWERKTKEKVSEEREGVLGISEEVKTLVVKEAREPIEKGSERGLVAKVGVEKIAAVYMDMGATATKLESDWGCFDFKKDRICYQVLLVGNGISHLSVATAAATATFAMAKDVWSRTCGSASASSSPIPRERGNRRQQQGTYLDRSVDMEELLAAMGETQNEDELFAVMSPYSGRQLSMRFMVSLLSREPDWQRTLALLDWINEKALYSPSLFAYNVVLRNVLRAKQWHLAHGLFDEMRHKGLSPDRYTYSTLITSFAKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLCDYSKAISIFTRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMADNAVQPDTVSYSTLLAIYVENQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEAELFGEAIHLFRLMQSKDVPQNVVTYNTMINIYGKTLEHEKATNLIQEMKKKGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAIAILARAGRIEEATWVFRQAFDAGEVKDISVFGCMINLFSKNKKYGNVVEVFEKMRQVEYFPDSDVIAVVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFKMVESLFEKLDSNPNINKKELHLVAASIYERADRLNDASRVMNRMNQKAIRSHDYTQ 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 643 677 IPR002885 -
Spst1g01811 752 Pfam PPR repeat family 226 275 IPR002885 -
Spst1g01811 752 Pfam PPR repeat family 331 375 IPR002885 -
Spst1g01811 752 Pfam PPR repeat family 402 446 IPR002885 -
Spst1g01811 752 Pfam PPR repeat family 472 516 IPR002885 -
Spst1g01811 752 FunFam pentatricopeptide repeat-containing protein At5g39980, chloroplastic 418 575 - -
Spst1g01811 752 Gene3D Tetratricopeptide repeat domain 571 751 IPR011990 GO:0005515
Spst1g01811 752 Gene3D Tetratricopeptide repeat domain 311 455 IPR011990 GO:0005515
Spst1g01811 752 MobiDBLite consensus disorder prediction 137 156 - -
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Spst1g01811 752 NCBIfam pentatricopeptide repeat 474 508 IPR002885 -
Spst1g01811 752 NCBIfam pentatricopeptide repeat 264 297 IPR002885 -
Spst1g01811 752 NCBIfam pentatricopeptide repeat 649 679 IPR002885 -
Spst1g01811 752 NCBIfam pentatricopeptide repeat 335 368 IPR002885 -
Spst1g01811 752 NCBIfam pentatricopeptide repeat 439 470 IPR002885 -
Spst1g01811 752 NCBIfam pentatricopeptide repeat 369 402 IPR002885 -
Spst1g01811 752 NCBIfam pentatricopeptide repeat 405 438 IPR002885 -
Spst1g01811 752 NCBIfam pentatricopeptide repeat 230 262 IPR002885 -
Spst1g01811 752 Pfam PPR repeat 650 675 IPR002885 -
Spst1g01811 752 Pfam PPR repeat 611 637 IPR002885 -
Spst1g01811 752 Pfam PPR repeat 544 571 IPR002885 -
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Spst1g01811 752 Gene3D Tetratricopeptide repeat domain 175 310 IPR011990 GO:0005515
Spst1g01811 752 Gene3D Tetratricopeptide repeat domain 456 564 IPR011990 GO:0005515
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Spst1g01811 752 PANTHER OS03G0856100 PROTEIN 556 745 - -
Spst1g01811 752 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Spst1g01811 752 SUPERFAMILY HCP-like 285 503 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01811 250 705 Glycosyltransferase AT1G05670 22.391 5.26e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01811 - - gmx:100782934 1137.09