Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01810 ATGAGTGGGAGCAATAGGAAAGCCCGTTGTAGTGGAAGAGGATTTAGTGTTACAAGGTCGGACATAACCGTGGCTCCCAATCCCAAACAAAGAAGGCAATTATCTAAGCAAGGAGTTCCTCTAACTCATGATTTACATGTACAAGAGGTTGTTCACAGGCAGTCTCAAATAATTAATCCTTGTACCAAGCCTAAGCTACAGTTCCATCCAACTTTCCTGAATGATTCCTATGAAATGTGCAGAAATATCTGCGCCGAATATGCCAAGACCTTCTATCTAGGAACCTTGCTTATGACGGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAGCTGGTTGATGGTCCTAACGCTGCGTATATGAGCTCTTCTGTTCTTGATAGGTGGGAAGATAGGTTGGAAGACATTTTCAATGGACATCCCTATGATATGCTTGATGCTGCTCTTACTGATACCCTCTCCAAGTTTCCGTTGGATATTAAGCCTTTCAGGGACATGATACAAGGTATGAGAATGGATACCAGGAAATCCCGCTACAACAATTTCCAAGAATTATATCTTTACTGTTACTATGTGGCGGGAACTGTTGGTCTAATGACTGTACCAATCATGGGTATCGCACAGGAGTCTGTCATCCCTGTGCAAAGTGTATATGATGCTGCACTATATCTGGGGATAGGAAATCAACTCACCAACATTCTTAGAGATGTCGGTGAGGATGCATTAAGAGGTAGAGTGTACCTTCCCCAAGACGAACTAGCCCAGTTTGGATTGTGTGACAAGGATGTGTTTTCAAGAAATGTGACTGAAAGATGGAGAAAGTTTATGAAACATCAAATTACGAGGGCAAGAATCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTCGAAAAGGCCAGCCGTTGGCCAGTTTGGTCCTCATTAATATTGTATCGTAAGATCCTAGATGCAATTGAAGACAACGATTACGACAATTTGACTAAACGAGCTCATGTGGGACGAGCCAACAAAATTTTTACGTTGCCTCTAGCTTATACTAGATCCCTCTCTAATCGCAAAACCAAATCTCGTCTTTCTTTGATAAGGCTTATTTAG 1119 0.4227 MSGSNRKARCSGRGFSVTRSDITVAPNPKQRRQLSKQGVPLTHDLHVQEVVHRQSQIINPCTKPKLQFHPTFLNDSYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAAYMSSSVLDRWEDRLEDIFNGHPYDMLDAALTDTLSKFPLDIKPFRDMIQGMRMDTRKSRYNNFQELYLYCYYVAGTVGLMTVPIMGIAQESVIPVQSVYDAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDKDVFSRNVTERWRKFMKHQITRARIYFNRAEEGVSQLEKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAHVGRANKIFTLPLAYTRSLSNRKTKSRLSLIRLI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01810 372 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 25 358 - -
Spst1g01810 372 Pfam Squalene/phytoene synthase 87 342 IPR002060 GO:0009058
Spst1g01810 372 Gene3D Farnesyl Diphosphate Synthase 69 350 IPR008949 -
Spst1g01810 372 FunFam Phytoene synthase chloroplastic 69 351 - -
Spst1g01810 372 ProSitePatterns Squalene and phytoene synthases signature 2. 231 256 IPR019845 GO:0016765
Spst1g01810 372 SFLD Squalene/Phytoene Synthase Like 74 356 IPR002060 GO:0009058
Spst1g01810 372 SFLD Phytoene synthase like 74 356 IPR044843 GO:0004311
Spst1g01810 372 CDD Trans_IPPS_HH 78 345 IPR033904 GO:0004311
Spst1g01810 372 SUPERFAMILY Terpenoid synthases 75 363 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01810 Spst-Chr1 26307986 26309816 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01810 K02291 - gmx:100782394 635.565