Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01808 ATGGGGAAGAAAGTCAGAAAGAAGAGTCGAGGTTCTGCCAAGGAGAAGGTGGTTGCTACCCATTTGCCAAAAAAGGTTATTGAATCAACCAACCCGACTGTCGAGTCTGTTGATGAGGGGGATTTGGTTGTAAAAGAGACTAGTTCTTGCCCTCATTTTGTAAAAGGTGTTAATTTAAACAGATTGTCCACTAAGATTGAATCTTGTGGATCCTTAAGGTGCGAGGATTGTAGGGAAGGTGCGTCTGATAGAAGGAGTGGTAAAGGAAAAGGTAAACATGGGAAGAAGAAAGGTGGTGCATCATTAGATTCAAAATCCGAGTCAAAGTCTATATGGGTTTGTTTGGAGTGTGGTCAATTTACCTGTGGAGGCTTAGGGCTACCAATAATCCCGCACTGCCATGCGGTGGTGCATGCGAGGAAAAATCGGCACCCCTTGGTGGTTCATTTTGATAAGCCTCAACTGTGTTGGTGTTTTCCTTGCGACATGCTTATTCAAGTTGATAAAATTGAAAAAACTGATGAATCGAGTCATCTTCTATCTGATGTTGTGAAATTGTTGAAAGGACGATCACAAGAAAAATATTCAGCGGATATTGAAGATGTTTTGGCTGGGGATAGCAGTATTACTTCCGAAATTAAGTCAAGAGCTCTGTTCTCAAATGATTCGTCTGGACAAGGTGGTTATGTAGTTAGAGGTATGATTAATCTTGGGAATACCTGTTTCTTCAATTCAGTCATGCAAAATTTGCTAGCCATGAATAGATTGCGGGACAGCTTTCTAGAATTAGATGCTCCTGTTGGACCACTTATTAGTTCCTTGAAGAAGCTTTTCACCGAAACAAACCCTGAATCAGGATTGAAAAATGTTATAAATCCTAGATCTTTTTTTGGCTGTGTCTGTTCTAAGTCTCCCCAATTTCGAGGATATCAGCAGCATGACAGTCACGAATTGCTCCGTTGTTTACTGGATGGGTTAAATACTGAAGAACTAGCTGGAAGAAAGCAGAATGGTTCTCCGAAGAGAGATGGCACCTCTTCCAATACTTTAGTGGATGCTTTATTTGGGGGTCAGATATCAAGTACTGTGTGTTGCATAGAATGTGGGCATTTCTCAACAGTGTATGAACCTTTTTTAGATCTTTCACTTTCTGTCCCAACCAAGAAACCTCCACCTCGGAAGGCCCAACAATTACCTCGAACCAAAAAAGCTAAACTTCCACCAAAAAAGGTTGGAAAAACTCGAGTCAAAGTTAACAGGGATACTGATCCCTTACCTGTTCAAACTCTATCAAACCAATTATCCAGCCACGAATCATCTAGCCCTGATCAATCCGTCATATCAGCTGCTGGAGAAATGGGGACTTGTTCTGGTGATTCCACATTATTAGGTTCTGAAGAGATAGACAGTGTGACTGATAAAGAGGATTTGTCTTTACCTAATTTGGTTACTGCTCAACATATGGAAGTGCTTGACAATAAAACGTCAGATGATTTTACATGGTTGGATTATGTGGAAACTGGAACAATGATAGATGAGTGTGGTTTTATTTCCCAAAAGGAGGATGATCCAGAGGTACGGGATACTCAGATCAAAGATGAATATTTAAATGAATTCCATGAACAGGCTAGCTGTGAATCCAGTGGTCCTGCTTGTTTCCCTAAGGAGGGTCAGAACCCAGGACCCAAATTTTCGTCAGCAAATGGGTGGGAAGATGAGGTTCCATTACAAGTTCAAGATTCAGAAGTGCTATTACTTCAATACAAAGAAGGAAGTTCCTCAGCTGCTGAGATCATAGGAGGAGATAGTGAGGCCTCCTCATTGGTTTTGGGTGGTTATCAAGAATTGGAGTTTGATGGCTTTGGTGACTTATTCAATGAGCCTGAAGTTGCTGGACCTGCTCCCAGACCATCTTCATGCAGTGAGGTCATGGAAGCTAGTCTTGTCATTGGAAGTAACAGTGAGTCTGATCCAGATGAAGTAGATGACACATACTCTCCTGTCTCTATAGAGAGTTGCTTGGCACATTTTATAAAACCTGAGCTTCTCTCGGATGAAAATGCTTGGCATTGTGAGAACTGTTCTAAAGTTCTCCACCGTCAAAATTTGGAAGAAAAAAAGAAGGCAAGAGCTGTATCTGGTGGAAATGAATCTGGAATTCGTGATGAACCATGGCATGCAGTTAATTCTTGTTCTGTTAATGTCAGAACCAATGGAAATGGGAACATACAAAATGACCAAAAAATAGAAAGTTTGGTCTTACAAGATACACATGACACAAAGCTTGAAAATGGTCAAAGAGATGAGCTTAGTTTAATCCTTAATGAAAGGAATAGTGGCACATTTGAAATGGAAGATACTCATAATGATGAGTTACAATCTTCAAGTTTTCATAATGCTTACGGTGAAGAAAGCTGCATTCATTTAGTTGCTGATTCTTGTATTACAGAAAATTTTCAAAAAAGACATTCTCGGATGATAGGTAATGAAAACAATGACTCAGAGGATGCCGACTGCAAAAGTGTGAAAGTGAAGAGGGATGCCACTAAGAGGGTCCTCATATATAAAGCTCCGCCTGTCTTGACCATTCATCTAAAGAGATTCAGCCAAGATGCCCGTGGTCGCTTAAGTAAATTAAATGGCCATGTCAATTTCAGAGAAACAATGGATATTAGACCATATATTGATCCCAGGTGCACAATTGACGAGAAGTATGAATACCACTTGGTTGGTTTAGTGGAGCATTCGGGAACTATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGGGGGCAGAGGAACAGGGGGAAGGATGATAAGGAAAATGAGGGTTTCACGTGGTATCAGGCAAGTGATGCATATGTGCGTGAAGTGTCCCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTTTACGAAAAAGTTTGA 2931 0.4084 MGKKVRKKSRGSAKEKVVATHLPKKVIESTNPTVESVDEGDLVVKETSSCPHFVKGVNLNRLSTKIESCGSLRCEDCREGASDRRSGKGKGKHGKKKGGASLDSKSESKSIWVCLECGQFTCGGLGLPIIPHCHAVVHARKNRHPLVVHFDKPQLCWCFPCDMLIQVDKIEKTDESSHLLSDVVKLLKGRSQEKYSADIEDVLAGDSSITSEIKSRALFSNDSSGQGGYVVRGMINLGNTCFFNSVMQNLLAMNRLRDSFLELDAPVGPLISSLKKLFTETNPESGLKNVINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLNTEELAGRKQNGSPKRDGTSSNTLVDALFGGQISSTVCCIECGHFSTVYEPFLDLSLSVPTKKPPPRKAQQLPRTKKAKLPPKKVGKTRVKVNRDTDPLPVQTLSNQLSSHESSSPDQSVISAAGEMGTCSGDSTLLGSEEIDSVTDKEDLSLPNLVTAQHMEVLDNKTSDDFTWLDYVETGTMIDECGFISQKEDDPEVRDTQIKDEYLNEFHEQASCESSGPACFPKEGQNPGPKFSSANGWEDEVPLQVQDSEVLLLQYKEGSSSAAEIIGGDSEASSLVLGGYQELEFDGFGDLFNEPEVAGPAPRPSSCSEVMEASLVIGSNSESDPDEVDDTYSPVSIESCLAHFIKPELLSDENAWHCENCSKVLHRQNLEEKKKARAVSGGNESGIRDEPWHAVNSCSVNVRTNGNGNIQNDQKIESLVLQDTHDTKLENGQRDELSLILNERNSGTFEMEDTHNDELQSSSFHNAYGEESCIHLVADSCITENFQKRHSRMIGNENNDSEDADCKSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFRETMDIRPYIDPRCTIDEKYEYHLVGLVEHSGTMRGGHYVAYVRGGQRNRGKDDKENEGFTWYQASDAYVREVSLDEVLRCEAYILFYEKV 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01808 976 FunFam Ubiquitinyl hydrolase 1 220 446 - -
Spst1g01808 976 MobiDBLite consensus disorder prediction 545 569 - -
Spst1g01808 976 MobiDBLite consensus disorder prediction 384 445 - -
Spst1g01808 976 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 184 IPR013083 -
Spst1g01808 976 MobiDBLite consensus disorder prediction 395 413 - -
Spst1g01808 976 MobiDBLite consensus disorder prediction 79 103 - -
Spst1g01808 976 SMART Zf_UBP_1 102 155 IPR001607 GO:0008270
Spst1g01808 976 MobiDBLite consensus disorder prediction 424 445 - -
Spst1g01808 976 FunFam Ubiquitinyl hydrolase 1 740 976 - -
Spst1g01808 976 Pfam Zn-finger in ubiquitin-hydrolases and other protein 74 167 IPR001607 GO:0008270
Spst1g01808 976 SUPERFAMILY RING/U-box 48 166 - -
Spst1g01808 976 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 907 924 IPR018200 GO:0004843|GO:0006511
Spst1g01808 976 ProSiteProfiles Zinc finger UBP-type profile. 48 184 IPR001607 GO:0008270
Spst1g01808 976 FunFam Ubiquitinyl hydrolase 1 45 188 - -
Spst1g01808 976 Gene3D Cysteine proteinases 636 713 - -
Spst1g01808 976 Gene3D Cysteine proteinases 743 976 - -
Spst1g01808 976 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 45 976 - -
Spst1g01808 976 SUPERFAMILY Cysteine proteinases 231 975 IPR038765 -
Spst1g01808 976 Gene3D Cysteine proteinases 215 443 - -
Spst1g01808 976 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 233 248 IPR018200 GO:0004843|GO:0006511
Spst1g01808 976 Pfam Ubiquitin carboxyl-terminal hydrolase 233 973 IPR001394 GO:0004843|GO:0016579
Spst1g01808 976 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 232 976 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01808 Spst-Chr1 26283082 26286937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01808 848 976 Miscellaneous Gene Families AT2G24640 34.848 8.53e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01808 K11844 - gmx:100780952 1637.47