Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01186 ATGGAGGTTGTTTCGCAGCCTCTGTGCACCATTCTATCCGCCACGCGCAAACACTCACATCTCATTCCGCAACAAATCCCCAATCCCTCTAAACACTTTCCCTTCTTATCTTTCCGCTCCACCACTCTCTCCTCTTCTTCTCGTTTTTCTCCACCACCTCTTTTGTTCGCGGCGCCGGAGAACCAATTGAGTGTCGGGGAAGGAGAGGACGCCAATGCAAGTGAATGGGCACTGCAAGATTTTTATTCCCTCAGGAGGGATGTTGAGATTATGTCACATCGTGTTGAAGAGATTAGAGAATCTTCTGGTCTACACCTATTGGAGCAAGAACTTGCCAGTTTGGAGGAGCAAGCAGCTGATAGCTCTTTCTGGGACAATCGGGCCAAAGCTCAAGAGACTCTTTCGACCTTGGCTGATGTCAAAGATAAGATAAAATTACTAAATGATTTCAAGACCCAGGTTGAGGATGCAGAAACAATAGTTAAGCTGACTGAGGAAATGGAATCCATTGATAGAGGGCTTTTTGAGGAGGCTGCCAATCTTATTAAAGAACTGAATAAATCACTAGATCGATATGAGCTGACTCAACTTCTCTCTGGTCCTTATGATAAAGAAGGTGCTGTTATCTCTATTACAGCAGGCGCTGGTGGTACTGATGCCCAGGATTGGGCAGACATGCTTCTTAGGATGTACATGAGATGGGGTGAGAAACAGAGATACAAGACCAGAGTGATTGAGAAGTCCCCCGGAGAAGAAGCTGGTATTAAATCTGCTACTGTTGAAGTTGAAGGTCGTTATGCATATGGGTATTTGTCTGGGGAGAAAGGAACGCATCGCATTGTTCGTCAATCACCTTTTAATGCCAAAGGCCTTCGTCAGACAAGCTTTTCTGGTGTTGAGGTCATGCCTCTTCTTCCGGAGGAATCTATGGATGTTGAAATTCCTGAGGAGGACCTAGAAATTAGTTTTTCAAGAGCAGGTGGAAAGGGTGGTCAGAATGTGAACAAGGTTGAAACTGCAGTTCGGATTACACACATTCCAACTGGTGTCACTGTTCGCTGCACAGAGGAGAGATCACAACTGGCGAATAAGATCAGAGCTTTGAGCCGTTTGAAAGCCAAGTTGTTGGTTATAGCTGAAGAGCAACGCGCATCAGAAATTAAGCAGATTCGAGGGGACGCAGTCAAGGCTGAATGGGGGCAACAAATACGGAACTATGTATTCCATCCATACAAACTAGTTAAAGATGTAAGAACAGGGTATGAAACGACAGATGTCAACTCTGTAATGGATGGTGAGTTGGACCCCTTCATCAAATCTTACCTCAAATACAAGTTCAATCTGTCACTGTCTACAGGTGCGGTTAACTAA 1371 0.45 MEVVSQPLCTILSATRKHSHLIPQQIPNPSKHFPFLSFRSTTLSSSSRFSPPPLLFAAPENQLSVGEGEDANASEWALQDFYSLRRDVEIMSHRVEEIRESSGLHLLEQELASLEEQAADSSFWDNRAKAQETLSTLADVKDKIKLLNDFKTQVEDAETIVKLTEEMESIDRGLFEEAANLIKELNKSLDRYELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYMRWGEKQRYKTRVIEKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIRALSRLKAKLLVIAEEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGYETTDVNSVMDGELDPFIKSYLKYKFNLSLSTGAVN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01186 456 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 325 341 IPR000352 GO:0003747|GO:0006415
Spst1g01186 456 Pfam PCRF domain 107 299 IPR005139 GO:0006415
Spst1g01186 456 Hamap Peptide chain release factor 2 [prfB]. 80 446 IPR004374 GO:0005737|GO:0006415|GO:0016149
Spst1g01186 456 Gene3D - 209 439 - -
Spst1g01186 456 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 79 445 - -
Spst1g01186 456 SMART PCRF_a_2 162 274 IPR005139 GO:0006415
Spst1g01186 456 Pfam RF-1 domain 309 418 IPR000352 GO:0003747|GO:0006415
Spst1g01186 456 Gene3D - 305 401 - -
Spst1g01186 456 NCBIfam peptide chain release factor 2 91 443 IPR004374 GO:0005737|GO:0006415|GO:0016149
Spst1g01186 456 Coils Coil 175 195 - -
Spst1g01186 456 Gene3D Release factor 86 202 - -
Spst1g01186 456 SUPERFAMILY Release factor 107 446 IPR045853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01186 Spst-Chr1 14149883 14159720 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01186 K02836 - gmx:100775574 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01186 1 14149883 14159720 Spst1g01186 1 14149883 14159720 ECH