Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01185 ATGTTGGTGATCTTCATTTGCGTCCTCCTTTTCTTCATCTTTTTGTACAGATTCCTCGTCGCTTATGGCGATTTTACTTTGATGTCTAAGAAGCAACCTAAACGCGAAGAAATTGAAGATAAGGTTGTTTGGATTACTGGTGCTAGCCGTGGAATTGGAGAGATTTTGGCGAAACAGCTTGCAAGTTTAGGAGCCAAGCTTATAATCTCTGCGAGGAATGAAGCTGAGCTAAACCGAGTAAGGACACAACTGAAAGGTAGGCATGCACCTGATGAAGTCATGATTTTACCATTGGATTTATCCTCTGGAGAGGATTCTCTTAGGGTAGCTGTTGAGAAAGCAGAATCCTTTTTTCCGGATTCTGGTGTTGATTACATGATCCATAATGCAGCTTTTGAGCGTCCTAAAACATCAATTTTAGATGTAACTGAGGGAGGTCTTAAGGCTACATTTGAAGTCAATGTTTTTGGGACAATAACTCTTACAAAGCTCTTGGCACCTTTCATGTTGAAGAGGGGACATGGTCATTTTGTGGTGATGAGTAGTGCAGCAGGAAAGACACCTGCCCCGGGTCAGGCTTTATACTCTGCTTCTAAATATGCGCTCAATGGTTACTTCCATACCTTGCGTTCAGAGCTCTGTCAGAAAGGAATTCGGGTAACTGTGGTCTGTCCTGGTCCAATAGAAACATCAAATAACGCTGGATCGAAGGTTCCATCTGAGGTTTATCTTGGAGTATACAGTATACTCTCCCTTTGTGTTTTGATTGTTGCTATTGTCCCCTTGAACATGCCATGTGGTGTTTCTCAACAGAAGCGTGTGTCAGCTGAAAGGTGCGCTGAGCTGACTATCATTGCTGCGACCCATGGCTTAAAGGAAGCTTGGATATCATATCAGCCTGTGCTTGCTGTCATGTATCTCGTTCAGTACATGCCAGTTGTTGGTTATTGGCTCATGGACAAGGTTGGCAAAAATCGAGTAGAAGCTGCCGAACAAAAGGGAAACACATATTCTTTGAGCTTACTGCTTGGAAAAAAGAAGGCCCCTTGA 1050 0.4324 MLVIFICVLLFFIFLYRFLVAYGDFTLMSKKQPKREEIEDKVVWITGASRGIGEILAKQLASLGAKLIISARNEAELNRVRTQLKGRHAPDEVMILPLDLSSGEDSLRVAVEKAESFFPDSGVDYMIHNAAFERPKTSILDVTEGGLKATFEVNVFGTITLTKLLAPFMLKRGHGHFVVMSSAAGKTPAPGQALYSASKYALNGYFHTLRSELCQKGIRVTVVCPGPIETSNNAGSKVPSEVYLGVYSILSLCVLIVAIVPLNMPCGVSQQKRVSAERCAELTIIAATHGLKEAWISYQPVLAVMYLVQYMPVVGYWLMDKVGKNRVEAAEQKGNTYSLSLLLGKKKAP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01185 349 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 182 210 IPR020904 GO:0016491
Spst1g01185 349 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Spst1g01185 349 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Spst1g01185 349 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Spst1g01185 349 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Spst1g01185 349 PRINTS Glucose/ribitol dehydrogenase family signature 121 132 IPR002347 -
Spst1g01185 349 Pfam short chain dehydrogenase 41 234 IPR002347 -
Spst1g01185 349 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 2 347 - -
Spst1g01185 349 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 41 230 - -
Spst1g01185 349 Gene3D - 24 327 - -
Spst1g01185 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 321 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01185 Spst-Chr1 14143986 14149024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01185 37 264 Acyl Lipid Metabolism Gene Families AT1G62610 30.043 9.65e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01185 K11165 - gmx:100795991 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01185 1 14143986 14149024 Spst1g01185 1 14143986 14149024 ECH