Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01182 ATGGCGGAAAATTCTTCAACTGAGCTGAACAAGTTTGTGTTTTTTTGTTTGTTGCTAATACAAGTTGCAGTTTCTGAAATCATATTTGAAGAACGCTTTGAGGATGGATGGCGAAGTCGATGGGTAAAATCAGACTGGAAAAGCAGTGAGGGCAAAGCAGGTTCTTTCAAACACACAGCTGGGAAATGGGCTGGTGATCCAGATGACAAAGGTATTCAAACATCCAGTGATGCCAAACACTTTGCCATCTCTGCAAAAATACCAGAATTCACCAACAAAAACAGAACATTGGTCCTTCAGTATTCTGTAAAATTTGAGCAAGAAATTGAGTGTGGTGGAGGTTACATCAAGCTTCTCTCTGGATTTGTCAATCAAAAGAAGTTTGGTGGGGATACACCTTATATTTTAATGTTTGGACCAGATCTATGTGGCACTGATACAAAGAAACTCCATGTGATACTCTCCTACCACGGTCAAAATTACCCCATAAAGAAGGACCTGCAATGTGAAACTGACAGGTTAACCCATTTCTACACATTCATTCTCAGGCCAGATGCCACATACAGTGTCCTGGTTGATAATAGAGAGAGAGATTCTGGAAGCATGTATACAGATTGGGATATTCTTCCTCCGCGAAAAATCAAAGATGTCAAGGCCAAAAAGCCTGCAGACTGGGAAGAAAGAGAATACATTGAAGATCCTAATGATGTCAAACCTGAGGGATATGATTCAATCCCAAGAGAAATTCCTGACCCAAATGCTAAACAGCCTGATAACTGGGATGAAGAGGAAGATGGGAAATGGAAACCACCAAAGATACCGAATCCAGAATACAAAGGACCATGGAAAAGAAAGAAAATCAAGAACCCTAACTACAAAGGGAAATGGAAAACTCCATGGATAGATAATCCAGAGTTTGAAGATGACCCCGATCTTTATGTTCTTAAGCCTATCAAGTATGTGGGCATTGAAGTTTGGCAGGTTAAAGGCGGTTCAGTTTTTGACAACATTTTGATATGTGATGATCCTGATTATGCAAAACAAGTTGTTGAGGAAGTGTTTGCCAACAGGGAGATTGAAAAGGAAGGTTTTGAGGAAGCAGAGAAAGTGAGAAAAGCCAAAGAGGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAAAGGCGAAGACGAGAGAGAGGTCATGATCGTAGACACCGGGACAGATACAGAGACAAATATAGAAGGCATCGCCATTACGAGGATTATCATGTAAGTTTTCTTAAGTTAGTCTCTCTAATGCCTATTAGGTTCATTGAAATTGAGGTGGCAGTTTGA 1317 0.407 MAENSSTELNKFVFFCLLLIQVAVSEIIFEERFEDGWRSRWVKSDWKSSEGKAGSFKHTAGKWAGDPDDKGIQTSSDAKHFAISAKIPEFTNKNRTLVLQYSVKFEQEIECGGGYIKLLSGFVNQKKFGGDTPYILMFGPDLCGTDTKKLHVILSYHGQNYPIKKDLQCETDRLTHFYTFILRPDATYSVLVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWEEREYIEDPNDVKPEGYDSIPREIPDPNAKQPDNWDEEEDGKWKPPKIPNPEYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKGGSVFDNILICDDPDYAKQVVEEVFANREIEKEGFEEAEKVRKAKEEEEAQRAREEGERRRRERGHDRRHRDRYRDKYRRHRHYEDYHVSFLKLVSLMPIRFIEIEVAV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01182 438 PANTHER CALRETICULIN AND CALNEXIN 12 385 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 Coils Coil 365 392 - -
Spst1g01182 438 MobiDBLite consensus disorder prediction 365 392 - -
Spst1g01182 438 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Spst1g01182 438 MobiDBLite consensus disorder prediction 254 281 - -
Spst1g01182 438 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 224 IPR013320 -
Spst1g01182 438 PIRSF Calreticulin 6 415 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 FunFam Calreticulin 1b 26 210 - -
Spst1g01182 438 MobiDBLite consensus disorder prediction 365 401 - -
Spst1g01182 438 PRINTS Calreticulin signature 132 148 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 PRINTS Calreticulin signature 249 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 PRINTS Calreticulin signature 287 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 PRINTS Calreticulin signature 320 340 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 PRINTS Calreticulin signature 221 234 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 MobiDBLite consensus disorder prediction 225 281 - -
Spst1g01182 438 SUPERFAMILY P-domain of calnexin/calreticulin 207 322 IPR009033 GO:0005509|GO:0005515
Spst1g01182 438 ProSitePatterns Calreticulin family signature 2. 136 144 IPR018124 GO:0005509
Spst1g01182 438 Pfam Calreticulin family 266 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 Pfam Calreticulin family 30 264 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Spst1g01182 438 Gene3D - 26 385 - -
Spst1g01182 438 Gene3D Calreticulin/calnexin, P domain 200 320 IPR009033 GO:0005509|GO:0005515
Spst1g01182 438 FunFam Calreticulin 211 312 - -
Spst1g01182 438 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01182 Spst-Chr1 14112404 14117947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g01182 12 342 Miscellaneous Gene Families AT5G61790 35.550 9.31e-63 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01182 K08057 - gmx:100776652 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01182 1 14112404 14117947 Spst1g01182 1 14112404 14117947 ECH