Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g01123 ATGTCGCAGTTGTTGGACAAAGCCAAAAACTATGTTTCGGAGAAAGTCGCTAACATGCCGAAGCCCGAGGCGAGTGTCACCGACGTCGATTTCCAGCGCGTGAGCCGCGACAGCATCCAGTACTTGGCCAAGGTTGCTGTCGCCAATCCTTATGCCACACCCCTTCCTATTTGTGAGATCAAGTACTCCCTCAAAAGTGCTGGCAGGGAGATAGCATCAGGGTTAATACCTGACCCAGGGTCGTTGAAGGCAAAGGACACAACAATGGTGGATGTGCCAGTGAAGGTGCCTCACACCATATTACTGAGCTTGGCAAGGGACATTGGTGCTGATTGGGACATTGATTATCAATTGGATATTGTTCTCATCATTGACCTTCCTGTCTTTGGCAATTTCTCCATTCCTCTTTCTCAGACCGGTGAGATCAAGCTCCCCACCATCAGAGACATGTTTGCCTAA 459 0.4946 MSQLLDKAKNYVSEKVANMPKPEASVTDVDFQRVSRDSIQYLAKVAVANPYATPLPICEIKYSLKSAGREIASGLIPDPGSLKAKDTTMVDVPVKVPHTILLSLARDIGADWDIDYQLDIVLIIDLPVFGNFSIPLSQTGEIKLPTIRDMFA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g01123 152 Pfam Late embryogenesis abundant protein 44 140 IPR004864 -
Spst1g01123 152 FunFam Desiccation protectant protein Lea14-like 17 151 - -
Spst1g01123 152 SUPERFAMILY LEA14-like 1 150 - -
Spst1g01123 152 Gene3D - 17 151 - -
Spst1g01123 152 PANTHER - 3 146 IPR045043 -
Spst1g01123 152 SMART why 24 141 IPR013990 GO:0009269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g01123 Spst-Chr1 13634815 13635449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g01123 - - gmx:547837 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01123 1 13634815 13635449 Spst1g01123 1 13634815 13635449 ECH
Spst1g01123 1 13634815 13635449 Spst4g01888 4 59500415 59501020 PCT