Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00433 ATGGAGAAAAACTGGGTTTTGAGATGGATGTTGGTGGTGGGGGTGATGTGTTGGTGTGGAGAAGGGATTGGGGTGAATTGGGGAACCCAAGCTACACACAAGTTGCCACCAAACACAGTGGTTCAGATGTTGAAGGACAACGGGATTCAGAAAGTGAAACTTTTTGATGCAGATGACTCCACCATGAGTGCCTTGGCTGGGACTGGGATTGAAGTCATGGTGGCCATCCCTAATAATCAGCTTGCTGAGATGAATGACTATGGCCGGGCCAAACAGTGGGTTAAGAGAAACGTCACGCGTTACAACTTCAATGGGGGTGTTAATATCAAGTATGTAGCAGTTGGGAACGAGCCATTTTTGAAATCCTACAACAATTCGTTCTTGAATATCACCTTTCCTGCACTGCAGAACATTCAAAATGCCCTTAACGAAGCAGGTGTTGGAAACACAATAAAGGCTACAGTACCCTTGAATGCAGATGTGTATCAGTCTCCAGAGAACAATCCTGTTCCATCTGCAGGAATATTTAGGCCTGATATCAGTGGTCTCATGACTCAGATAGTGCAATTTCTCAGCAAGAATGGTGCACCATTTACTGTAAACATTTACCCCTTCTTAAGTCTTTATGGAAATGATGATTTTCCTTTCAACTACGCCTTCTTTGATGGTGTAGACAATCCAGTAAACGATAATGGTACTCCATACACCAATGTATTTGATGCAAATTTTGATACCTTGGTTGCTGCTCTCAAATCAGTGGGGTTTGGAGACCTGCCTATTTTGGTGGGAGAGGTAGGATGGCCAACAGAAGGAGACAAGAATGCCAATGTAGGCAATGCTTTGAGGTTCTATAATGGCCTTCTGCCGAGGCTTGTAGGCAATAGAGGCACGCCGCGCCGCCCTGGACATATTGAAGTTTATCTCTTTGGACTCATTGATGAGGATGCCAAGAGCATTGCTCCAGGAAGCTTTGAACGCCACTGGGGAATATTCAGATATGATGGACAACCCAAGTTTCCAATGGACCTTTCTGGTCAGAACCAAAACAAATATCTGATAGGTGCACAGAATGTGAAATACCTTGCTCCAAGGTGGTGCATGTTTAATCCTGATGCTAAGGATCTAAGCAAGCTTCCAGAAAACATCAACTATGCTTGCACCTTTGGAGATTGCACTGCACTTGGATACGGATCCTCTTGCAACAACCTTGATACTAATGGCAATGCTTCTTATGCGTTTAATATGTACTTCCAGGTGCAAAACCAGAACCCCATGGCCTGCAATTTTCAAGGTTTGGCCAAGCTTACTACGGACAATATCTCAACACCCACTTGCAATTTTATCATTCAGATAGTTAATTCTTCAGCCGCTTCTTTGATCCCCTCACTTGTTGCTTTCTTGTTTGTTAGTTTATTCATGATCCTGTTTTGGTAG 1434 0.4372 MEKNWVLRWMLVVGVMCWCGEGIGVNWGTQATHKLPPNTVVQMLKDNGIQKVKLFDADDSTMSALAGTGIEVMVAIPNNQLAEMNDYGRAKQWVKRNVTRYNFNGGVNIKYVAVGNEPFLKSYNNSFLNITFPALQNIQNALNEAGVGNTIKATVPLNADVYQSPENNPVPSAGIFRPDISGLMTQIVQFLSKNGAPFTVNIYPFLSLYGNDDFPFNYAFFDGVDNPVNDNGTPYTNVFDANFDTLVAALKSVGFGDLPILVGEVGWPTEGDKNANVGNALRFYNGLLPRLVGNRGTPRRPGHIEVYLFGLIDEDAKSIAPGSFERHWGIFRYDGQPKFPMDLSGQNQNKYLIGAQNVKYLAPRWCMFNPDAKDLSKLPENINYACTFGDCTALGYGSSCNNLDTNGNASYAFNMYFQVQNQNPMACNFQGLAKLTTDNISTPTCNFIIQIVNSSAASLIPSLVAFLFVSLFMILFW 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00433 477 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Spst1g00433 477 SMART X8_cls 364 447 IPR012946 -
Spst1g00433 477 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Spst1g00433 477 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Spst1g00433 477 Gene3D Glycosidases 21 351 - -
Spst1g00433 477 Gene3D - 361 459 - -
Spst1g00433 477 FunFam Glucan endo-1,3-beta-glucosidase 8 360 456 - -
Spst1g00433 477 Pfam X8 domain 365 433 IPR012946 -
Spst1g00433 477 FunFam Glucan endo-1,3-beta-glucosidase 5 22 349 - -
Spst1g00433 477 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 16 436 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00433 Spst-Chr1 5749600 5752358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00433 6 452 Miscellaneous Gene Families AT1G64760 75.391 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00433 - - gmx:100815300 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00433 1 5749600 5752358 Spst1g00433 1 5749600 5752358 ECH