LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g00432	ATGGGTGCAAGTCGAAAGCTCCAGGGAGAGATAGATCGTGTTCTGAAGAAGGTTCAGGAAGGTGTTGAAGTCTTCGATAGCATCTGGAATAAGGTTTATGACACGGACAATGCTAACCAGAAGGAAAAGTTTGAAGCAGACCTCAAGAAGGAGATTAAGAAACTACAGAGGTATAGAGACCAAATCAAGACGTGGATTCAATCCAGTGAGATCAAGGACAAGAAGGTTAGTGCCTCATATGAACAAGCTTTGGTGGATGCACGCAAGCAAATTGAACGAGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACTAAGACCAAAGCATTTTCCAAAGAAGGCTTGGGTCAGCAACCTAAGACTGATCCGAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCACAGATTGATAACTTTGAAGCAGAGCTTGAAGGGCTTTCTGTTAAGAAAGGAAAGAACAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGTCACAAGGCCCATATAAAAAAATGTGAATTCATTTTGAGGCTATTAGATAATGATGAATTAAGTCCTGAGCAGGTTAACGATGTGAAAGATTTTTTGGATGACTATGTTGAGCGTAATCAGGAGGATTTTGATGATTTTAATGACGTTGATGAACTATACAGTTCATTACCTTTAGACAAGGTGGAGACACTAGAAGATCTTGTCACAATTCCCACTGGTATTTCTAAGGTAAAGGAAACTGTTATTTCCAATCATCAAGAGACTTCTATCCAGGAGCAAGCTGATGACACAGCATCCCAGGATAGCAATTCTGACAATGTTGCCAAAACTCCACCTCCTAAAAGTTGTGGAATTAGTTCTGCTAGTTCAACTCCTACAGGCAATCACACTTCCCCAGTTTCCATGAATGTCTCTAGTCATACCTTGTCTAGTCCACCTGCTGTTGCAGCCATACCTGGTACAAATTCTGTGCGGAATGTGTTGGAGAACACTAATGTTACCAATTCATCTTCCGTTAATCAGTCTACCTCTACAAAGGAAGAAGACATTAATAGCTTCCCTAGCCGGAGACCGTCTCCATCACTTTCTGATGCAACACTTTTGAGGGGAAGAAACTCCCTATCAAATCAAGCAACAGCGAGCATCCCTCTTGGTTCTGCAAACATGGTTCCCAGTAATGGGGCCCATGGATCAGTCCCTTCAGCCTCTGAAATAACTAAAAGGAACCTATTGGGAGCTGATGATAGACTTGGCAGTAGTGCGATGGTGCAACCTCTTGTATCCCCGCTAAGTAATAGATTGATCTTGCCTCAGGCTGCAAAGGCTAGTGATGGAACTGTTTCAGTTGACTCTAGTACTGTTAATGAAGCTGCAGCTGTATCTGGGAGAGTTTTCTCCCCTTCTGTGGTTCCTGGCATGCAATGGAGACCTGGTAGTCCCTTTCAGAATCAGAATGATCCAGGTCAGATTCGTGCTAGAACTGAAATTGCTCCTGATCAAAGGGAAAAGTTTTTGCAGAAGTATCAGCAAGTGCAACAAGGGCACGGTACCCTTCTTAATATGCCTTCTCTTGTTGGGGGAAACCATAAGCAATTTTCTCCCCAGCAGCAAAACCCCCTTTTGCAGCAGTTTAACTCTCATGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTCGGTGGTATTTCTTCTGCATCATTGCAGCAGCCACCCAATTCTGTCCAGTCCCCCTCTAGTCAACAGCCTCTGATACCTGGAGTTTCTAAAGATTCAGATGTTGGCAATTCTAAGATTGAAGAACAGCAGCAACATCAGAATTTTTCTGATGAGCCAACAACAGAATCTACTGCTAGCACTGGCATTGGCAAGAATCTCATAAATGAAGATGATTCAAAATCAGCTTATGCTGTAGATTCTCCTGTAGGAGTTTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGGGATATAGATTTGTCGCCTGGCCAACCATTACAATCCAATCAACCAACTGGCAACCTTGGTGTTATTGGAAGAAGAAATGGTTCTGAACATGGAGCAATTGGTGATAGTTTTAGTGGACCGAGTGTTAGTTCTGGTGGGGTACGTGATCAATTGTATAATTTACAGATGCTTGAGGCAGCCCACTTCAAAATTCCCCTACCCAAAGACTCGGAACGTCCCAGGACATATACTCCTAAGCACCCGGCTATCACACCTCCTAGTTATCCTCAAGTACAGTCACCTATTGTTAATAATCCTGCCTTTTGGGAGAGAGTAGGTCTGGAACCATTTGGCACGGATACTCTATTCTTTGCATTTTATTATCAACAGAATACTTACCAACAATACTTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAACACTTGGTTTCAGCGGCATGAAGAGCCCAAAGTTGCTACTGATGAATATGAGCAAGGAACTTACGTGTACTTTGATTTCCATATTGCAAATGATGACATGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTTACTTTTGAGTATAACTATCTTGAAGATGATCTCCTTGTATCAGTGCATGGAAACTCTGATGATGAGGTTTTGGGAAACATCCAATTAGGACAAGGTGCTGCTTCTTCTGATGGCATTAGTGGACAATGA	2721	0.4252	MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFNDVDELYSSLPLDKVETLEDLVTIPTGISKVKETVISNHQETSIQEQADDTASQDSNSDNVAKTPPPKSCGISSASSTPTGNHTSPVSMNVSSHTLSSPPAVAAIPGTNSVRNVLENTNVTNSSSVNQSTSTKEEDINSFPSRRPSPSLSDATLLRGRNSLSNQATASIPLGSANMVPSNGAHGSVPSASEITKRNLLGADDRLGSSAMVQPLVSPLSNRLILPQAAKASDGTVSVDSSTVNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNDPGQIRARTEIAPDQREKFLQKYQQVQQGHGTLLNMPSLVGGNHKQFSPQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLGGISSASLQQPPNSVQSPSSQQPLIPGVSKDSDVGNSKIEEQQQHQNFSDEPTTESTASTGIGKNLINEDDSKSAYAVDSPVGVSASLPESAQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGSEHGAIGDSFSGPSVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPAITPPSYPQVQSPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLVSVHGNSDDEVLGNIQLGQGAASSDGISGQ	906

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g00432	906	MobiDBLite	consensus disorder prediction	264	328	-	-
	Spst1g00432	906	PANTHER	CCR4 NOT-RELATED	24	873	IPR040168	GO:0030015
	Spst1g00432	906	Gene3D	-	718	872	IPR038635	-
	Spst1g00432	906	Coils	Coil	41	61	-	-
	Spst1g00432	906	MobiDBLite	consensus disorder prediction	578	603	-	-
	Spst1g00432	906	MobiDBLite	consensus disorder prediction	615	643	-	-
	Spst1g00432	906	Coils	Coil	132	159	-	-
	Spst1g00432	906	MobiDBLite	consensus disorder prediction	660	716	-	-
	Spst1g00432	906	PIRSF	NOT_su_3_5	1	878	IPR012270	GO:0006355\|GO:0030015
	Spst1g00432	906	MobiDBLite	consensus disorder prediction	110	131	-	-
	Spst1g00432	906	MobiDBLite	consensus disorder prediction	340	376	-	-
	Spst1g00432	906	MobiDBLite	consensus disorder prediction	578	643	-	-
	Spst1g00432	906	FunFam	CCR4-NOT transcription complex subunit 3 isoform X1	717	872	-	-
	Spst1g00432	906	MobiDBLite	consensus disorder prediction	662	693	-	-
	Spst1g00432	906	Pfam	NOT2 / NOT3 / NOT5 family	733	871	IPR007282	GO:0006355
	Spst1g00432	906	Pfam	Not1 N-terminal domain, CCR4-Not complex component	4	236	IPR007207	GO:0005634\|GO:0006355
	Spst1g00432	906	Coils	Coil	77	104	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g00432	Spst-Chr1	5731587	5744179	Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g00432	K12580		-	gmx:100785965	1491.48

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst1g00432	1	5731587	5744179	Spst1g00432	1	5731587	5744179	ECH