Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00406 ATGTCGTCTGTGCCAGCACGAACAGGGCGACAAAGACAGCGTTATGAAGACAACTTGCGCCTTGTCTCTGGATGTATTCCCTATAGATGGAGAAAGTTCAACACAGATCTAATGGGAGAAACTGAGGAGATAATAGAAGTACTAATGGTTTCTTCTCCAAAACGTGATGACCTTGTATTCCCAAAGGGTGGATGGGAGGATGATGAGACAGTTACAGAAGCTGCTTGCCGCGAAGCTTTAGAGGAAGCAGGAGTTAAAGGAATACTAAGAGAAATTCCATTAGGAATATGGGAGTTCAGAAGCAAAAGCAGTCAAGACTTGTGTGTCGTGGAAGGAGGCTGCAGAGGATACATGTTTGCATTGGAGGTGACTGAAGAACTTAACACATGGCCAGAGCAGAAAAATCGTGCTCGGCAATGGTTGAACATAGAACAGGCATTCAGACTCAGCAGATATGACTGGATGCGTAATGCACTTGAGGCGTTTTTGAGAGTGATGGCAGAGGACAGAAAGCTTGATGAGAAGGAAGACCAGAATATTGAACTTGAAGCACCTTCAATTATAGTAGCAGATGTGCCAGAATGCCAAAGTATATCACCTAACTGCTATAAAATATCCTCTACCATGCAGCACCATGGCATGCCTCCTTCGGCCAATCTTTTGTCATGTGCTACTCAAGAGATAGCCATCCACTTTGGTTATTGA 705 0.4426 MSSVPARTGRQRQRYEDNLRLVSGCIPYRWRKFNTDLMGETEEIIEVLMVSSPKRDDLVFPKGGWEDDETVTEAACREALEEAGVKGILREIPLGIWEFRSKSSQDLCVVEGGCRGYMFALEVTEELNTWPEQKNRARQWLNIEQAFRLSRYDWMRNALEAFLRVMAEDRKLDEKEDQNIELEAPSIIVADVPECQSISPNCYKISSTMQHHGMPPSANLLSCATQEIAIHFGY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00406 234 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 165 - -
Spst1g00406 234 Pfam NUDIX domain 43 161 IPR000086 -
Spst1g00406 234 ProSiteProfiles Nudix hydrolase domain profile. 18 163 IPR000086 -
Spst1g00406 234 ProSitePatterns Nudix box signature. 63 84 IPR020084 GO:0016787
Spst1g00406 234 SUPERFAMILY Nudix 20 171 IPR015797 -
Spst1g00406 234 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 6 169 - -
Spst1g00406 234 FunFam Nudix hydrolase 13 mitochondrial 4 165 - -
Spst1g00406 234 CDD Nudix_Hydrolase_9 21 156 IPR047198 GO:0016462
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00406 Spst-Chr1 5279405 5283039 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00406 K07766 - gmx:100794003 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00406 1 5279405 5283039 Spst1g00406 1 5279405 5283039 ECH
Spst1g00406 1 5279405 5283039 Spst4g03470 4 75367444 75370942 PCT