Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00403 ATGGCTACTGCTTCTTCTCTCCTCCCAAGTCCGCACCTTCCCGCACCCCTCATCTCCAAACTCAACTCTTCCCCCACAACATGGAGCATCTTCATCCTCACACACCCTTCACACCCCAAACTCAGAAACAAGCAAAAGCTGTTACCTTTCCCCATCAATGCAGTGTACACACCCCGCAGCCCCTACGCCCCTTCCACACCCTCCAAGACTGAACCCCGCAACGACGTCATTTCCGTCCTCAACGAGAGGATTCGCCGCGAGTACAGCAAGAAAGAGATTTTTAGAACGGTGATGGACTCGGAGGAAGCGGGGAAGTACATGCGGATGGTGAAGGAGCAGCAGCAGAAGGGGTTGCAGAAGTTGAAGGGCGACAGGGAGAGCAAAGATGGAGTTTTTAGCTACAGGGTCGACCCTTACACGCTCCGTTCTGGGGACTATGTTGTGCACAAGAAAGTGGGGATTGGGAGGTTTGTTGGGATAAGGTTCGATTCTGGTAAGAATTCTTCACAAACCACTGAGTATGTTTTCATCGAGTATGCTGACGGCATGGCGAAGCTACCTGTCAACCAGGCTGCCAAAATGCTCTATAGATATAGTCTGCCAAATGAAACCAAGAAGCCAAAGGCATTAAGCAAGTTGAATGATACTGGTGCATGGGAGAGAAGAAAGGTTAAAGGGAAGGTCGCAATACAGAAGATGGTTGTGGACCTGATGGAACTCTATCTACATAGGCTTAAACAAAAAAGGCCTCCCTATCTGAAGACTCCTGCCTCGGTTGAATTTGAAGCTCAGTTCCCTTATGAACCCACGCCAGATCAGAAACAGGCATTTATTGATGTTGAGAGGGATATGACAGAGCGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACCGAGGTTGCAATACGTGCTATCTTCTGTATTGTCTCAGCTAAAAAACAAGCGATGGTTCTGGCACCAACTATAGTTCTAGCCAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATACCCTGATATCAAGGTTGGGCTACTAAGCAGGTTCCAGACCAAAGCAGAGAAAGAAGACAATTTGGACATGATTAAGAATGGTAGCCTGGATATCATCGTTGGGACTCATTCACTCCTAGGAGATCGTGTTACTTATAACAATCTTGGTCTGCTTGTGGTTGATGAGGAGCAGAGGTTTGGTGTCAAACAGAAGGAGAAGATTGCTTCTTTTAAAACATCTGTGGATGTACTTACTTTATCTGCAACCCCCATACCACGAACTCTTTATTTAGCATTAACAGGGTTCCGTGATGCCAGTTTAATTACAACTCCACCACCAGAAAGAGTTCCTATCAAGACTCACCTTTCTTCATTCAGTGAGGACAAAGTAATATCAGCCATCAAGTATGAGCTGGATCGTGGTGGTCAAGTATTTTATGTTCTGCCACGTATTAAAGGGCTTGATGAAGTAATGGCATTTCTTGTAGAGTCATTTCCGAATGTGGAAATAGCCATTGCCCATGGGAAGGTTGGTAGTCACAACTTTTTAAGCGTCTAG 1572 0.4555 MATASSLLPSPHLPAPLISKLNSSPTTWSIFILTHPSHPKLRNKQKLLPFPINAVYTPRSPYAPSTPSKTEPRNDVISVLNERIRREYSKKEIFRTVMDSEEAGKYMRMVKEQQQKGLQKLKGDRESKDGVFSYRVDPYTLRSGDYVVHKKVGIGRFVGIRFDSGKNSSQTTEYVFIEYADGMAKLPVNQAAKMLYRYSLPNETKKPKALSKLNDTGAWERRKVKGKVAIQKMVVDLMELYLHRLKQKRPPYLKTPASVEFEAQFPYEPTPDQKQAFIDVERDMTERETPMDRLICGDVGFGKTEVAIRAIFCIVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTKAEKEDNLDMIKNGSLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSEDKVISAIKYELDRGGQVFYVLPRIKGLDEVMAFLVESFPNVEIAIAHGKVGSHNFLSV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00403 523 Gene3D - 208 448 IPR027417 -
Spst1g00403 523 SMART ultradead3 265 457 IPR014001 -
Spst1g00403 523 SMART CarD_TRCF_2 140 242 IPR003711 -
Spst1g00403 523 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 75 483 - -
Spst1g00403 523 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 446 IPR014001 -
Spst1g00403 523 SUPERFAMILY CarD-like 135 203 IPR036101 -
Spst1g00403 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 515 IPR027417 -
Spst1g00403 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 451 IPR027417 -
Spst1g00403 523 Gene3D - 144 201 - -
Spst1g00403 523 CDD DEXHc_TRCF 260 448 - -
Spst1g00403 523 Pfam CarD-like/TRCF domain 141 241 IPR003711 -
Spst1g00403 523 Pfam DEAD/DEAH box helicase 291 429 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00403 Spst-Chr1 5237149 5243288 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00403 - - pvu:PHAVU_001G099500g 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00403 1 5237149 5243288 Spst1g00403 1 5237149 5243288 ECH