Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00399 ATGGCGCTATTCACCGACGCATCACCGCCACCGGCGTTAGGGGAGGAGCCGTTACCTCACGACAACGACGTCGCTTCGTTCGACGTCGTATTACTGGACGACGAGGGTTTTCCATCGCAACTCCCCGGATCGGAAACGCCGTCTGAAACCAGCAGTTTCGCCACCGATTTCTATCGCTGCGGAACCGATTGGTCCTCACTGTTGTCGCCGGAAGTCAGTAATAATAGACACAGGGATTTCGAGCGCGATTCGGGGAAGAAGATGAAGCAGGCCAATCTGTTCCAGATTTGGGGTTTCAACAGAAACGACGCTGGTAGTCCAGTTGAATCTGGACCCAGTTTGAGTGGTTATTCTGATGACGGAGGTGGTTCTTCTGAGAGGAAGTTTGTGAAACCTGGAGATTGGGGTTCGGTTTTGCGCGACACAGGGAAAGACTCTGAGCACACGAAATCTTTTAGCAAAAGAAAGGGTTTTAGTGGTGAAAATAGGGGACAACATTCACTGTTGATGCTTTTCGGTATGGGTGTGTTCAAGGGTGCTCAGCGTATTTTCTTAGTCATTTCCATTGTGATCACTATGGCGGCCTTAGCAAGAAATGGTCACATGGCCCAATATATTGCTCTCCTCTCACGGGACGGCTTGTTCAAATGTGTCTCTCGGTATATCCACCCTTTGGAATTTAATACTGAACATGTGATTGATGGTGTCAAAGTGACTTTGTTAGAAGCTAATCATTGTCCTGGTGCAGCTTTGATTCACTTTGGCCTCCCAGATGATCAGTGCTATTTGCACACTGGGGACTTCAGAGCTTGTAAACCAATGCAAGCTTACCATCTTCTTGTAAATCAACGTGTGAATGTACTTTATTTGGATACCACATATTGCAACCCAAAATATAGGTTCCCTTCCAAGGAAGATGTACTTAATTATGTAGTCAAAATTACAAAGAACCACCTCAAAATTCATCCCAGAACTTTAGTGGTTGTTGGGGCATATAGTATTGGCAAAGAATGCGTATATCTTTCAATTTCTAAAGCTCTTGGGGTAAAAATTTATGCCAATGCTTCAAGAAGACGGATTTTGCAAGCTTTTGGTTGGCCCGACCTTTCAGATAGACTCTGCACAAAAGGAAATAACACACTTCTCCATGTTCTGCCTATGTCTTCTTTGAGACTCGAGACCTTAAAGGATTACTTGAAGACCTACAAGGAACAATTCACAGCAGTTTTGGCGTTTCGTCCAACAGGTTGGACTTTCAGTGAGAAGATAAGCAACGATCTGGAACTAATTAAACCTGTTACCAAAGGAAGTATCACGATATATGGGGTTCCCTACAGTGAACACTCCAGCTTCACAGAATTGCGAGATTTTGTTCAGTTTTTGAGACCTGACAAGATCATTCCAACTGTGAATGTTGGGAATGCTGCTAATCGAGAAAAGATGCAATCCTACTTCCAGGACTGCATACCCTACTTAAAGAGTATAGAGCAGAAGATAGGAGGCAACGTTTTTACTAGAAAGGGTCAGATTGATTTAAAGTCAAACATTGCAGGTAAACCAATTCACCTCACTCACTAA 1578 0.4404 MALFTDASPPPALGEEPLPHDNDVASFDVVLLDDEGFPSQLPGSETPSETSSFATDFYRCGTDWSSLLSPEVSNNRHRDFERDSGKKMKQANLFQIWGFNRNDAGSPVESGPSLSGYSDDGGGSSERKFVKPGDWGSVLRDTGKDSEHTKSFSKRKGFSGENRGQHSLLMLFGMGVFKGAQRIFLVISIVITMAALARNGHMAQYIALLSRDGLFKCVSRYIHPLEFNTEHVIDGVKVTLLEANHCPGAALIHFGLPDDQCYLHTGDFRACKPMQAYHLLVNQRVNVLYLDTTYCNPKYRFPSKEDVLNYVVKITKNHLKIHPRTLVVVGAYSIGKECVYLSISKALGVKIYANASRRRILQAFGWPDLSDRLCTKGNNTLLHVLPMSSLRLETLKDYLKTYKEQFTAVLAFRPTGWTFSEKISNDLELIKPVTKGSITIYGVPYSEHSSFTELRDFVQFLRPDKIIPTVNVGNAANREKMQSYFQDCIPYLKSIEQKIGGNVFTRKGQIDLKSNIAGKPIHLTH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00399 525 MobiDBLite consensus disorder prediction 1 21 - -
Spst1g00399 525 Pfam DNA repair metallo-beta-lactamase 369 474 IPR011084 -
Spst1g00399 525 SUPERFAMILY Metallo-hydrolase/oxidoreductase 208 485 IPR036866 -
Spst1g00399 525 MobiDBLite consensus disorder prediction 139 158 - -
Spst1g00399 525 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 215 483 - -
Spst1g00399 525 MobiDBLite consensus disorder prediction 105 128 - -
Spst1g00399 525 Gene3D - 300 448 - -
Spst1g00399 525 FunFam DNA cross-link repair 1A 300 448 - -
Spst1g00399 525 MobiDBLite consensus disorder prediction 106 120 - -
Spst1g00399 525 Gene3D - 215 470 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00399 Spst-Chr1 5204437 5211724 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00399 K15340 - gmx:100790844 687.567