Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00378 ATGACGGTGTTCTCCGCCAAGCAGGTGTTCCCGCTCGACTGCGAGGCCGAAGTGTCGCAGCGTCTCCTCCAAGCCTCACACTCCGGCGATCTCCCCCTCGCCTTCCACTGCATCGCCGATCCGTCCGTCGATGTCAACTTTACCGGCGCTGTCATGTTGAAGACCGCTGCCACTGACCTCCTCCTCCTCCCGGAATCCCCCAGCCAAGTCCGCCTCGACTTTCAGGAATTCGTCTCCGACGTCACGCCGCTCTTTCTCGCCGTCCATGCCGCCAACGCCGACCTCGTCAGGAAGTTACTGGTAATGAACGTCACGCTTGTTGCCGTTCTCTCAGATCCTGCTTACTCCTACAGTGTGGGAGCTGATGTAAACCAGAAACTCTTCCGAGGCTTTGCAACTACTGCAGCTGTGAGGGAGGGTCACTTTAAAATTCTTGAGATCTTACTTAAAGCAGGGGCATCGCAACCAGCATGTGAAGAAGCTCTTATTGAGGCAAGTTTCCATGGCCATGCAGGGTGTGTAGAATTGCTCATGAGCTCCGATTTGATCCGCCCTTATGTCGCTGTACATGCTCTTGTGACCGCAAGCTGCAGGGGGTTTGTAGACGTTGTTGAGACGCTCATAAAGTGTGGTGTGGATGCGGGTGCAACAGATCGGGTGCTTTTACAGTCACTTAAGCCTTCTCTCCACACAAATGTGGATTGTACTGCACTGGTTGCAGCTGTAATTCACAGGCAGGTTCCTGTTGTTGATTTGCTACTGCAGAATGGTGCTACGATAGACCTCAAAGTGAGACTTGGAGCATGGTCATGGGACACTTCCACTGGTGAAGAGCTTCGTGTGGGTGCTGGGCTGGGAGAACCTTATGGAATCACCTGGTGTGCAGTTGAGTATTTTGAAAGAAGTGGTTCTATAATACGCAAGCTCCTGCAGCATGTCTCCTCCAAACCTCATCGTGGAAGGACCCTTCTACACCATGCCATACTCTGTGGCAATGTTGAGGCTGTTAAGGTACTCTTAGAATGCGGTGAAGATGTCGAATCCCCAGTTAAAACAACCAGCAAGACTCAGTTCCTTCCTATACACATGGCATCTCGTCTAGGCTTACCGACAGTTATTCAATGCCTTGTTGATTTTGGTTGTGATTTGAACTCCACAACAGACTATGGCGACACAGCTTTGATGATCTGTGCAAAATTTAAGCAAGAGGAGTGTCTCAACGTACTAACAAGGGCTGGTGCTGATTTTGGCTTGGTGAATATTGCTGGTCAATCTGCGAGTTCACTCTCTGAGTCAAACAAGTGGTCAATTGGTTTTCAACAAGCAGTGTTGGATACAATCAAAAGCAGCAAGATACCCAAATCCAGCAATACTACCACTTTTTCACCTTTAATATTTGTAGCTCAATCTGGGGATACTGAAGCATTGAAAATTGTCATTGAATCTAGAGAATTTGATCTTGACTATCAAGATGATAGTGGTTTCTCTGCAGTTATGCACGCTGCTTCAAAGGGGCACGTGGATTCTTTTCGATTGCTGGTATATGCTGGATCCGATGTGAAATTGTGCAATAAATCTGGTGAAACAGCAATAACCCTATCTGAAATGAATCAGAACTGTGATCTATTCGAAAAGGTCATGCTTGAATATGAGCTTGAAAAGGGCAATATCAATGCTGGTGGATTCTACGCTCTACATCGCGCAGCTCGTCGTGGTGACTTGGATGCCGTCACGTTGCTCACCAGCAAAGGTTATGATGTCAATGCCCCAGATGGGGAGGACTTTACTCCACTCATGTTAGCAGCAAGGGAAGGCCATGCGTCCGTTTGCGAGCTTCTAATCTCATGCGGTGCTCATTGTAATGCTAAAAATGCTCGAGGGGAAACTGCACTTTATCTAGCAAGGACATTCTCTGGAGGTAAAAACGATGCAGAAACTGTTATACTCGATGAACTTGCTCGTAAATTGGTATTAGGTGGTTCCTGCGTTCTGAAGCACACCAAAAGTGGGAAGGGTTCTCCCCATGGGAAACAAATGCGGATGTTGGGTTCTGCTGGTGTTCTGTGTTGGGGTAAATCAAGCCGGAGAAATGTGATTTGCAGTGAGGTAGAGTTAGGAGCAAGCTCAACCTTACGTAGAAATAGGTACAAGAAAGGTGATGCAGATGAAGCTGGAACATTTAGGGTGCTTACTAACAAGAACAGAGAAGTGCATTTTGTATGTGATGGAGGATTAGAAGGTGCTGAGCTTTGGGTGAGGGGTATTAAACTTGTAACCAAAGAGGCTATTTTTCATAAGCAGAGATCAGTCTAA 2313 0.4743 MTVFSAKQVFPLDCEAEVSQRLLQASHSGDLPLAFHCIADPSVDVNFTGAVMLKTAATDLLLLPESPSQVRLDFQEFVSDVTPLFLAVHAANADLVRKLLVMNVTLVAVLSDPAYSYSVGADVNQKLFRGFATTAAVREGHFKILEILLKAGASQPACEEALIEASFHGHAGCVELLMSSDLIRPYVAVHALVTASCRGFVDVVETLIKCGVDAGATDRVLLQSLKPSLHTNVDCTALVAAVIHRQVPVVDLLLQNGATIDLKVRLGAWSWDTSTGEELRVGAGLGEPYGITWCAVEYFERSGSIIRKLLQHVSSKPHRGRTLLHHAILCGNVEAVKVLLECGEDVESPVKTTSKTQFLPIHMASRLGLPTVIQCLVDFGCDLNSTTDYGDTALMICAKFKQEECLNVLTRAGADFGLVNIAGQSASSLSESNKWSIGFQQAVLDTIKSSKIPKSSNTTTFSPLIFVAQSGDTEALKIVIESREFDLDYQDDSGFSAVMHAASKGHVDSFRLLVYAGSDVKLCNKSGETAITLSEMNQNCDLFEKVMLEYELEKGNINAGGFYALHRAARRGDLDAVTLLTSKGYDVNAPDGEDFTPLMLAAREGHASVCELLISCGAHCNAKNARGETALYLARTFSGGKNDAETVILDELARKLVLGGSCVLKHTKSGKGSPHGKQMRMLGSAGVLCWGKSSRRNVICSEVELGASSTLRRNRYKKGDADEAGTFRVLTNKNREVHFVCDGGLEGAELWVRGIKLVTKEAIFHKQRSV 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00378 770 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 493 522 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 187 216 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 459 489 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 233 262 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 560 589 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 157 186 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 319 348 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 356 385 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 389 418 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 79 108 IPR002110 GO:0005515
Spst1g00378 770 SMART ANK_2a 593 622 IPR002110 GO:0005515
Spst1g00378 770 SUPERFAMILY Ankyrin repeat 29 263 IPR036770 -
Spst1g00378 770 Gene3D - 299 443 IPR036770 -
Spst1g00378 770 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Spst1g00378 770 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Spst1g00378 770 Gene3D - 186 276 IPR036770 -
Spst1g00378 770 Gene3D - 7 184 IPR036770 -
Spst1g00378 770 ProSiteProfiles Ankyrin repeat profile. 493 525 IPR002110 GO:0005515
Spst1g00378 770 ProSiteProfiles Ankyrin repeat region circular profile. 319 347 - -
Spst1g00378 770 PANTHER ANKYRIN REPEAT-CONTAINING 14 744 - -
Spst1g00378 770 ProSiteProfiles Ankyrin repeat profile. 319 351 IPR002110 GO:0005515
Spst1g00378 770 Pfam Ankyrin repeat 320 346 IPR002110 GO:0005515
Spst1g00378 770 Pfam Ankyrin repeats (3 copies) 461 521 IPR002110 GO:0005515
Spst1g00378 770 Pfam Ankyrin repeats (3 copies) 541 624 IPR002110 GO:0005515
Spst1g00378 770 Gene3D - 444 544 IPR036770 -
Spst1g00378 770 Gene3D - 545 649 IPR036770 -
Spst1g00378 770 SUPERFAMILY Ankyrin repeat 313 635 IPR036770 -
Spst1g00378 770 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00378 Spst-Chr1 4954298 4960015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00378 524 634 Miscellaneous Gene Families AT1G07710 31.579 2.21e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00378 - - gmx:100809132 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00378 1 4954298 4960015 Spst1g00378 1 4954298 4960015 ECH