Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00377 ATGTTGAAGGCCAAGTTCCTTCTTCCTTTTGGAAGTAATCCTGTGCGGGTTGCGGCTTTCTGCTTCAAAAACCTCAGGAAAATTCAGTTTGGGAAATTGGTCGGAGAAGGAGAAGTTTTAGCTGGGTTTAGTTGCAAAATTGTTGATGTAGCTCTGCTGGTCAGCGAATACAAGATTTTGCAAGATGAATTGGATGTTGTATCCTATAGAGTGCTGGGCTATCTTCTTCTTGGCATTGTAAGAATATACTCGAAAAAGGTTGAATATGCACTTGATGATTGCAATGAGATACTCATTAAAATCAATAAATTTGTGGGAAATAGAGAAGACTTTTCCCATGTGGAAACCTTGCGTATGTCTGTTAGTATACCGAGCAAACTACAGTTGGATGCTTTTGAGTTGGATTTGCTTGAGGACACTGGCAGAGACCATACTGCTCCTTCAGAAGAAATTACTATTAGTGACAAAGAGGTTGTGTGTAAAACTGGGGGATTTGGGCTGTTTTCTCAAGAAAAGGGATTTTCTGTTCCATTACTAGAAAACCTCTTCAATAATTCCATTTTGAAAACCTCCAATGTTGATAGAGCCAAGGAACAAGTAGGGGTCATGGCGCTTCTTGCTATCCTGTTTGAGGAGTTTGATATCAATGAAAATACCTGCTCTTTTGATCGCGATAAAGTGGGAAACGCTCATCTAAGTCAACTGTTGAGTATGATGGGTATTAAAGTTGATCCAGTTAGTTCACCAGAAAGCAGGGATACATTAGAAAACAGCATGTTTTCTCTGATGGAACCAATGAACTTGGACAATGTTTTAATAGTAGAGGGACTAGAAAAAGAATCTGTCAATTTGTCTGGTCAAGATCAACAAATTATTGAAGAACAGATAATTGAAGACATAGTACCAACTGATGATGAAATAAATGAAGAAAGTAGTAGAATCTCTCAAGTTGACATCAATATGTTTTGTGGGAGAGAGGAGGAACATGTGTTATCTGTGGAAGAATTTACCAAATATCGTCAAGTTGACACCGCCCAGAGTTCTGCCAAGGAAACATTTAGCTCATTATGCAACATGAATGAGGAAGTTATTGAAGTTCATGTAGCCAGAAGTTTGGAAGAAAGTATAGAAAATCCTCAAGATAAAAAATCCCATGAAAACGAATGTGTGTACCATGTCAATTCATCTGTTGCCAATGACATCCATGAAGAGCACATTGAAGGGGCTGTTGAAAAGCGTTATAGCAACCGCAAATTAGGGGTTCGAGAAAAGGTTTCACTTGAAGATGAAAACCTTAGTTTTACTCCATCTAAATCAAAAAATCTAGAAGTAACTCCTCAGTCTAAGTTTCGAGATGATTCTGTTGGAATGCCAAAACATGGTGCTACTACACCAGAGTCAATGTTTATTTCTACACCAGCTGCGAGAGACCACTCTCAGTTTTCAAGGAAAAGAAGAGCTGTTCTTGATCAAAAGAAGATTGTCCTGCCTAACAATTCTTATTTGGACGTGGATATCTTGGCATTGTCCTCAATAGAGTGTTACATTTTGAACCATTTCAGGGTAATTATGAAGAGGTTACGTAGTACAGAAGACATAGTTCGTAAACGAAGAAAATACCATTGTACTTCACTTGCTTGGAATAGAGAATCTCCCATTTCCTGTCATCCTGATATATTCTATGAGCCTTTGCTTCCTTGTTGTTCCTCAGAGCTTCAACTCCTATTCTCTAAAGAGAAAATAAAATTACCTGATTCCCTTAAGATTATGGAAACTTCAGGGAACTTAGCTGTGCTAGGGTCTCCAACTATTGCCACTCCGCGAAGCCCTCCTCAATTGTCAGATTCCGTTGAAATAGAGAAAACTCCAAGGATGTTAGATGTATTTGAATCTCTGCTTTCTGACATCCCAAAGCATGTACCAACTGCTCCACAAACATATCCTTCGAGTACACTTGAAAATGAGTTTCCTAGTCTGATGGATGAGGAAATAAATTCTTTTGAGGCAGATAATGCAAAATTAGCTGGGTGGTCTGATCGAACCAGAGTTGTAGCAAATTACTTGAAAAAGAGTTTTCTACCAGCAAGGAATCAGAAAGAGAAGAGTGTGCTAAACTTCTCTAAAGTTTTTGGAGGTCGAGCACGCAAAGAAGGGGCAAGGCTATTTTATGAAGTACTGGTTCTGAAAACTACTGGCTATGTAGATGTGGAGCAAAACGAAGCTTATGGAGATATTGCAATCTCTAAACTCCCAAAATTAGACCAAACTTTTTGA 2274 0.3861 MLKAKFLLPFGSNPVRVAAFCFKNLRKIQFGKLVGEGEVLAGFSCKIVDVALLVSEYKILQDELDVVSYRVLGYLLLGIVRIYSKKVEYALDDCNEILIKINKFVGNREDFSHVETLRMSVSIPSKLQLDAFELDLLEDTGRDHTAPSEEITISDKEVVCKTGGFGLFSQEKGFSVPLLENLFNNSILKTSNVDRAKEQVGVMALLAILFEEFDINENTCSFDRDKVGNAHLSQLLSMMGIKVDPVSSPESRDTLENSMFSLMEPMNLDNVLIVEGLEKESVNLSGQDQQIIEEQIIEDIVPTDDEINEESSRISQVDINMFCGREEEHVLSVEEFTKYRQVDTAQSSAKETFSSLCNMNEEVIEVHVARSLEESIENPQDKKSHENECVYHVNSSVANDIHEEHIEGAVEKRYSNRKLGVREKVSLEDENLSFTPSKSKNLEVTPQSKFRDDSVGMPKHGATTPESMFISTPAARDHSQFSRKRRAVLDQKKIVLPNNSYLDVDILALSSIECYILNHFRVIMKRLRSTEDIVRKRRKYHCTSLAWNRESPISCHPDIFYEPLLPCCSSELQLLFSKEKIKLPDSLKIMETSGNLAVLGSPTIATPRSPPQLSDSVEIEKTPRMLDVFESLLSDIPKHVPTAPQTYPSSTLENEFPSLMDEEINSFEADNAKLAGWSDRTRVVANYLKKSFLPARNQKEKSVLNFSKVFGGRARKEGARLFYEVLVLKTTGYVDVEQNEAYGDIAISKLPKLDQTF 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00377 757 Pfam N terminus of Rad21 / Rec8 like protein 58 106 IPR006910 GO:0005515
Spst1g00377 757 FunFam Sister chromatid cohesion 1 protein 4 680 757 - -
Spst1g00377 757 SUPERFAMILY "Winged helix" DNA-binding domain 680 753 IPR036390 -
Spst1g00377 757 Gene3D Structural maintenance of chromosome 1. Chain E 680 757 IPR023093 -
Spst1g00377 757 MobiDBLite consensus disorder prediction 436 457 - -
Spst1g00377 757 PANTHER SCC1 / RAD21 FAMILY MEMBER 660 755 IPR039781 GO:0007062|GO:0008278
Spst1g00377 757 Pfam Conserved region of Rad21 / Rec8 like protein 700 752 IPR006909 -
Spst1g00377 757 CDD Rad21_Rec8_M_AtSYN1-like 480 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00377 Spst-Chr1 4934429 4947647 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00377 K06670 - vum:124830678 359.762