Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00366 ATGGCTGTGACTCCTAAAATTGCTCCTTCCATGCTCTCTTCCGACTTCGCCAATTTGGCTTCCGAGGCTCACCGCATGCTCAACTTCGGCGCCGATTGGCTTCACATGGATATCATGATTGCCATTGCTTCCAAATTAAATGGGTTTTTTAAGTTGCATTTCAATAAGAATTCTCTAAGGCATTTTGTTCCCAATTTAACTATTGGCGCTCCAGTTATTGAAAGTTTGAGAAAACACACAAAGGCATATTTGGATTGTCATCTTATGGTTACAAATCCTCTTGATTATGTTGAACCCTTGGCAAAAGCTGGCGCTTCTGGTTTTACATTTCACGTAGAGACATCAAAAAATGACTGGAAAGAACTTATCCAAAGAATTAAGTCACATGGCATGAGGCCTGGGGTATCATTAAAGCCTGGGACCCCCATTGAAGAGGTCTTTCCTCTTGTGGAAGCTGAAAATCCTGTGGAAATGGTTCTTGTGATGACTGTAGAACCTGGATTTGGAGGACAAAAATTTATGCCAGAGATGATGGATAAAGTACGTATACTTCGGAAGAAGTATCCATCGCTTGACATAGAGGTTGACGGTGGTTTAGGGCCTTCAACCATAGAGGTGGCTGCATCAGCAGGAGCAAACTGCATTGTTGCTGGAAGTTCTGTGTTTGGTGCCCCGGAGCCAGCTCAAGTAATATCCTTGCTGAGGAATTCTGTTGAGAAAGCCCAGCAAACCTTGATACAGTAA 744 0.4315 MAVTPKIAPSMLSSDFANLASEAHRMLNFGADWLHMDIMIAIASKLNGFFKLHFNKNSLRHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLAKAGASGFTFHVETSKNDWKELIQRIKSHGMRPGVSLKPGTPIEEVFPLVEAENPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKKYPSLDIEVDGGLGPSTIEVAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKAQQTLIQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00366 247 Hamap Ribulose-phosphate 3-epimerase [rpe]. 4 237 IPR026019 GO:0004750|GO:0006098
Spst1g00366 247 SUPERFAMILY Ribulose-phoshate binding barrel 5 240 IPR011060 -
Spst1g00366 247 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 159 181 IPR000056 GO:0005975|GO:0016857
Spst1g00366 247 PIRSF RPE 1 41 IPR026019 GO:0004750|GO:0006098
Spst1g00366 247 PIRSF RPE 48 246 IPR026019 GO:0004750|GO:0006098
Spst1g00366 247 Coils Coil 241 247 - -
Spst1g00366 247 CDD RPE 6 235 IPR000056 GO:0005975|GO:0016857
Spst1g00366 247 Pfam Ribulose-phosphate 3 epimerase family 60 222 IPR000056 GO:0005975|GO:0016857
Spst1g00366 247 Pfam Ribulose-phosphate 3 epimerase family 6 39 IPR000056 GO:0005975|GO:0016857
Spst1g00366 247 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 5 243 IPR000056 GO:0005975|GO:0016857
Spst1g00366 247 Gene3D Aldolase class I 1 245 IPR013785 -
Spst1g00366 247 FunFam Ribulose-phosphate 3-epimerase 1 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00366 Spst-Chr1 4839386 4843951 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00366 K01783 - gmx:100500085 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00366 1 4839386 4843951 Spst1g00366 1 4839386 4843951 ECH