Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00347 ATGAACAGTAAAAAAGCATTACCTGTCTCAACCATTGTTAGTGGCTTTTGTTTCAGTCGTTGTGCCCAAAAGATGAGAGTTCTGGAGTTATCACCCTCAGATGGCAATGGTTCCTCTACTAATGAAGATGAACCTTTACCTCAGGATGCAGATTATAGTAATGTTCTGAGTATTAGTGACGAGCTAGAGACTTCAATCTTTGCAAGATTTCCAAGGTCGCAGCACTGGAAATTGTGCTTTCTAAACAAGCGGTTCTTGGCGCTAGCCAGGAGTGGCGAGATCTACCAAATAAGGAAAGAGTTAGGACTCAAAGAACCATCGGTATTCATGTTAGCTAGTGGGGAGAGCAATTGGTGGGGAATGGAGTGGCCTTTCAAGTCAAGCAGGAAGCTCCCTCCTATTCAATCAGATTATAGTTTCGAGTTTGGAGACAAGGAGTCATTTTGTGCAGGACCCCACCTATTAGTTTCAGGCAAGGAAATCCATGGAGCTGTAATTTGGAGGTTTGATTCAACAAATAATGAATGGCTCAAAGGACCATCTATGATCAACCCAAGGTGTCTTTTTGCATCAGCCACATGTGGTGCTATTGCTTTTGTTGCTGGGGGTCTTGATGCAACAACCTACACCCAAGTCTTGGATTCTGCTGAGAAGTACAACTCTGAAAGCCAGTGTTGGGAACCCCTCCCAAGGATGAACAAAAGGAGGAGGTTTTGCTCCGGTTGCTTCATGGATAACAAGTTTTATGTCCTTGGAGGGCAAGATGAGCATGGGAGGGACCTCACATGTGGGGAATTCTTTGATGGGAAGACAAATAGTTGGAACTTGATTCCTGACATGTGGAAGGATATTCCTCTTTTTGTTGCACAGAGTCCACCTCTTCTTGCTGTTGTCAACAACGAGTTGTACACACTGGATGCTTCTTCCAATGAGCTGAAAATGTATGTGAAGGGAAGCAATTCTTGGAAGACTTTGGGAGTGGTTCCTGTGAGAGCTGATGCACAAGGAGGTTGGGGCGTGGCTTTCAAATCTCTAGGTGATGAATTACTTGTGATTGGGGCACCTTGTGTGTCACACTCAGAGCGAGCCTTGTGTATGTACACTGGTTGCCCTGATCCTGCTGATGAGAAATTGAGGTGGAGACAAATTGGAAGTGGCAGCATTCAGCTCAATCACTTTATCCGCAATTGTGCTGTGATGGGGACCTGA 1209 0.4508 MNSKKALPVSTIVSGFCFSRCAQKMRVLELSPSDGNGSSTNEDEPLPQDADYSNVLSISDELETSIFARFPRSQHWKLCFLNKRFLALARSGEIYQIRKELGLKEPSVFMLASGESNWWGMEWPFKSSRKLPPIQSDYSFEFGDKESFCAGPHLLVSGKEIHGAVIWRFDSTNNEWLKGPSMINPRCLFASATCGAIAFVAGGLDATTYTQVLDSAEKYNSESQCWEPLPRMNKRRRFCSGCFMDNKFYVLGGQDEHGRDLTCGEFFDGKTNSWNLIPDMWKDIPLFVAQSPPLLAVVNNELYTLDASSNELKMYVKGSNSWKTLGVVPVRADAQGGWGVAFKSLGDELLVIGAPCVSHSERALCMYTGCPDPADEKLRWRQIGSGSIQLNHFIRNCAVMGT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00347 402 Pfam Kelch motif 235 280 IPR006652 GO:0005515
Spst1g00347 402 Pfam Kelch motif 185 233 IPR006652 GO:0005515
Spst1g00347 402 SMART kelc_smart 197 246 IPR006652 GO:0005515
Spst1g00347 402 SMART kelc_smart 153 196 IPR006652 GO:0005515
Spst1g00347 402 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 50 401 - -
Spst1g00347 402 SUPERFAMILY Kelch motif 156 370 IPR015915 GO:0005515
Spst1g00347 402 Gene3D - 112 383 IPR015915 GO:0005515
Spst1g00347 402 FunFam F-box/kelch-repeat protein SKIP11 100 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00347 Spst-Chr1 4714567 4715775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00347 56 277 Miscellaneous Gene Families AT4G33900 25.877 1.56e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00347 - - gmx:100777338 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00347 1 4714567 4715775 Spst1g00347 1 4714567 4715775 ECH