Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00305 ATGATAACAACACACCTTGTGCGTCATTTTCACAAACACCTCGCCAACCAAGCACTGGTGTTGGTAATCAAAGACCTTCCATTCGATGCGCACCCACCACCAACATCACCGTCACCTCCGTCATGGACAAACGATGCCGTCACAGAGGTTCTCCACTCCATCTCCCGCTACACCCTCCAATCTCCTCGCTCCATTGGCCGGCAGAGCGGCTTCCGCCACCGCACACCGCTGCGGCAGCGCAACCTCAACCTCGAACACCACAAGTTCTGCAACAATATTCTCGTCCTGGGCCCCGCGGCCCACCGAGATCCCTACAAGTCCCACCTCGGCCCACTAAAAGCCCTCGAGTTCTTCCGCTGGGTGGAAGTCCGCTACGCCTTCGCCCACACCGAAGCCACGTGCCGCGAGCTGGCCTGTCTCCTCGCCCGCGCCAACACAGTCAAACTCCTCTGGAACTTCCTCAAACAGTGCCCTCACGTTACCACCGCCACCGTCACGTGCGTCATCAAAGTCCTCGGAGAACAAGGCCTCGCCGGCGAAGCCTTGCTCACTTTCCACCGGATGAAACAGTTCCGCTGCAAAGCCGATACCCACTCATACAACGCATTGATCCACGCGCTCTGTCGCGTGGGGAACTTCACTAAGGCGCGTTTCCTTCTCCAGCAAATGGAGCTTCCCGGATTCCGGTGTCCGCCTGACACCTTCACTTACACGATTCTCATAAGCTCTTTCTGCCGTCATGGCAGGCTCACAGGCTGCCGGAAGGCCACGCGCCATCGAATTTACGAGGCCGCACGTCTCTTCCGGTTGATGCTTTTTAAAGGGTTGGTTCCCGATGTTGTGACTTACAATGCCCTAATTGATGGGTGTTGTAAGACGTTGCGCTTGGAGAGGGCGTTGGAGTTGCTAAATGACATGAAAACCAGGGGTGTTGTTCCGAACCGTGTTACGTATGATTCTTTTATTAGGTACTATAGTGCTGTGAATGAGATTGATAAGGGTGTTGAAATGTTGAGGGAGATGCAGAGATTGGGGCATGGGGTTCCCGGTTCGAGTTCGTATACTCCCATCATTCACGCGCTTTGTGAAGCTGGAAGGGTTCTTGAGGCTTGGGGGTTTCTTGTTGAGCTGGTTGATGGCGGATTCGTGCCCAGAGAATATACTTATGGGTTGGTCTGTGATGCGCTTCGCGCGGCAGGGGAGGGTGGCTTGTCATTGGAGGATGATGGGGTGCACAAGAGAATAAAGGATAGCTTATGGAATAGGTATAGGCAAATGATGAAGGTGAAGCATGTTATGACTCGCAAGGGCTATCCTGAGATGGAAGAACGGGAATGA 1338 0.5411 MITTHLVRHFHKHLANQALVLVIKDLPFDAHPPPTSPSPPSWTNDAVTEVLHSISRYTLQSPRSIGRQSGFRHRTPLRQRNLNLEHHKFCNNILVLGPAAHRDPYKSHLGPLKALEFFRWVEVRYAFAHTEATCRELACLLARANTVKLLWNFLKQCPHVTTATVTCVIKVLGEQGLAGEALLTFHRMKQFRCKADTHSYNALIHALCRVGNFTKARFLLQQMELPGFRCPPDTFTYTILISSFCRHGRLTGCRKATRHRIYEAARLFRLMLFKGLVPDVVTYNALIDGCCKTLRLERALELLNDMKTRGVVPNRVTYDSFIRYYSAVNEIDKGVEMLREMQRLGHGVPGSSSYTPIIHALCEAGRVLEAWGFLVELVDGGFVPREYTYGLVCDALRAAGEGGLSLEDDGVHKRIKDSLWNRYRQMMKVKHVMTRKGYPEMEERE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00305 445 Gene3D Tetratricopeptide repeat domain 229 345 IPR011990 GO:0005515
Spst1g00305 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Spst1g00305 445 Pfam PPR repeat family 196 246 IPR002885 -
Spst1g00305 445 Pfam PPR repeat family 278 322 IPR002885 -
Spst1g00305 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Spst1g00305 445 NCBIfam pentatricopeptide repeat 353 384 IPR002885 -
Spst1g00305 445 NCBIfam pentatricopeptide repeat 281 314 IPR002885 -
Spst1g00305 445 NCBIfam pentatricopeptide repeat 316 346 IPR002885 -
Spst1g00305 445 NCBIfam pentatricopeptide repeat 164 196 IPR002885 -
Spst1g00305 445 NCBIfam pentatricopeptide repeat 198 224 IPR002885 -
Spst1g00305 445 Gene3D Tetratricopeptide repeat domain 105 227 IPR011990 GO:0005515
Spst1g00305 445 Gene3D Tetratricopeptide repeat domain 346 409 IPR011990 GO:0005515
Spst1g00305 445 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 38 400 - -
Spst1g00305 445 Pfam PPR repeat 353 381 IPR002885 -
Spst1g00305 445 Pfam PPR repeat 164 193 IPR002885 -
Spst1g00305 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Spst1g00305 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00305 181 419 Glycosyltransferase AT1G05670 26.996 2.04e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00305 - - gmx:100784365 749.584