Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00249 ATGTTGAGGGTTGCAGCTAAGAGGCTCTCCTCGCTCTCCTCCTCTCCGTGGAGGGCCAACTACGCCGCCTCAGCGGTTCTCTCACAGAGCCCCGTCGCGCCGCCCTTTTCCTCAGAGGAACGCAGATCCGACTCGTTTTCGCTCCGACCGGAATCCTTCCTTCCTTTCAGAGGTTTTGCTACTGAAGCTCTTATCCACTCTAGAGAAAATAGCCTTATTCCTGAAATTCCTGCAACTGTCACGGCTGTTAAAAACCCTTCTTCTAAGATTATATATGATGAACACAACCATGAGCGATTTCCTCCTGGTGACCCAAGCAAAAGGGCATTTGCTTACTTTGTCCTAACTGGTGGTAGGTTTGTTTATGCCTCTTTGATACGTCTCCTTGTCCTCAAGTTTGTGCTCAGCATGTCAGCAAGTAAGGATGTTCTTGCTCTGGCTTCACTGGAAGTTGATCTCTCCAGCATTGAGCCAGGCACTACTGTGACTGTTAAGTGGCGTGGAAAGCCAGTATTCATCAGGCGCCGAACAGAAGATGATATTAAGCTTGCAAACAGTGTTGATGTTGCATCTCTCCGGGATCCCCAGCAGGATGCGGAAAGAGTTAAAAACCCTGAATGGCTCATTGTGATTGGGGTGTGCACACATCTGGGTTGCATTCCCTTGCCAAATGCGGGTGACTTTGGTGGATGGTTTTGTCCATGCCATGGTTCACATTATGATATTTCTGGCAGAATTAGGAAGGGACCGGCACCATACAATCTAGAGGTACCAACTTATACCTTTTTGGAGGAAAACAAGTTGATGATTGGTTGA 816 0.4804 MLRVAAKRLSSLSSSPWRANYAASAVLSQSPVAPPFSSEERRSDSFSLRPESFLPFRGFATEALIHSRENSLIPEIPATVTAVKNPSSKIIYDEHNHERFPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVASLRDPQQDAERVKNPEWLIVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLEENKLMIG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00249 271 Pfam Ubiquinol cytochrome reductase transmembrane region 93 142 IPR004192 GO:0008121
Spst1g00249 271 Pfam Rieske [2Fe-2S] domain 154 257 IPR017941 GO:0051537
Spst1g00249 271 SUPERFAMILY ISP domain 133 270 IPR036922 GO:0051537
Spst1g00249 271 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 141 271 - -
Spst1g00249 271 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 127 271 IPR006317 GO:0008121
Spst1g00249 271 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 181 269 IPR017941 GO:0051537
Spst1g00249 271 CDD Rieske_cytochrome_bc1 148 271 - -
Spst1g00249 271 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 78 271 IPR014349 GO:0051537
Spst1g00249 271 PRINTS Rieske 2Fe-2S subunit signature 209 220 IPR005805 GO:0016020|GO:0051537
Spst1g00249 271 PRINTS Rieske 2Fe-2S subunit signature 243 255 IPR005805 GO:0016020|GO:0051537
Spst1g00249 271 PRINTS Rieske 2Fe-2S subunit signature 231 243 IPR005805 GO:0016020|GO:0051537
Spst1g00249 271 Gene3D - 140 271 IPR036922 GO:0051537
Spst1g00249 271 SUPERFAMILY ISP transmembrane anchor 88 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00249 Spst-Chr1 3402871 3405228 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00249 K00411 - qsa:O6P43_009762 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00249 1 3402871 3405228 Spst1g00249 1 3402871 3405228 ECH